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Series GSE38270 Query DataSets for GSE38270
Status Public on Nov 30, 2012
Title 450k Analysis of 24 HNSCC cell lines
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary The methylation analysis of HPV+ HNSCC cell lines and HPV- HNSCC cell lines as well as clones from an infected HPV- cell line by Infinium HumanMethylation450 BeadChip
 
Overall design Analysis of 24 450k methylation profiles, comprising 3 HPV+ HNSCC cell lines and 3 HPV- HNSCC cell lines (in duplicate each) and 12 infected HPV- HNSCC cell line clones
 
Contributor(s) Lechner M, Fenton T, West J, Wilson G, Feber A, Thirlwell C, Dibra HK, Jay A, Butcher L, Gratrix F, Patel N, Vaz F, O'Flynn P, Kalavrezos N, Teschendorff AE, Boshoff C, Beck S
Citation(s) 25538261
Submission date May 25, 2012
Last update date Mar 22, 2019
Contact name Matthias Lechner
E-mail(s) m.lechner@ucl.ac.uk
Organization name University College London
Department UCL Cancer Institute
Lab Medical Genomics
Street address Gower Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (24)
GSM937830 HPV positive cell line UPCI:SCC47 - replicate 1
GSM937831 HPV positive cell line UPCI:SCC47 - replicate 2
GSM937832 HPV positive cell line UPCI:SCC90 - replicate 1
This SubSeries is part of SuperSeries:
GSE38271 FF and FFPE HPV+ and HPV- HNSCC and HNSCC cell lines
Relations
BioProject PRJNA167713

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38270_Matrix_processed_HNSCC_cell_lines.csv.gz 49.8 Mb (ftp)(http) CSV
GSE38270_Matrix_signal_intensities_HNSCC_cell_lines.csv.gz 55.9 Mb (ftp)(http) CSV
GSE38270_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table
Processed data are available on Series record
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