|
| Status |
Public on Jun 19, 2012 |
| Title |
TFH cell dynamics in Rhesus Monkeys during SIV infection |
| Platform organism |
Homo sapiens |
| Sample organism |
Macaca mulatta |
| Experiment type |
Expression profiling by array
|
| Summary |
Cells from SIV-negative (SIVnegative_p17, n=5; SIVnegative_p18, n=5) and SIV-chronic (ChronicSIVinfection_p18, n=6) SP tissues were sorted for microarray studies. RNA samples were prepared using the Illumina beads station assay and hybridized to the Illumina HumanHT-12 version 4 Expression BeadChip according to the Illumina’s instruction. The data were normalized with the quantile normalization method of Bioconductor package limma . Missing values were imputed with R package impute (http://cran.rproject.org/web/packages/impute/index.html). Genes with significant differential expression levels were identified using Bioconductor limma package with >= 1.5 fold change (up or down), the false discovery rate (FDR) adjusted P value < 0.05.
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| |
|
| Overall design |
Cells from SIV-negative (SIV and SIV-chronic SP) tissues were sorted for micorarray studies
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| |
|
| Contributor(s) |
Petrovas C, Haddad E, Sun X |
| Citation(s) |
22922258 |
| Submission date |
Jun 18, 2012 |
| Last update date |
Feb 13, 2020 |
| Contact name |
Xiaoyong Sun |
| E-mail(s) |
johnsunx1@gmail.com
|
| Organization name |
VGTI, FL
|
| Street address |
9801 SW Discovery Way
|
| City |
Port St. Lucie |
| State/province |
FL |
| ZIP/Postal code |
34987 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL10558 |
Illumina HumanHT-12 V4.0 expression beadchip |
|
| Samples (16)
|
|
| Relations |
| BioProject |
PRJNA168976 |
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