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| Status |
Public on Jan 14, 2013 |
| Title |
Transcriptome sequencing of Chinese tree shrew, Tupaia belangeri chinensis |
| Organism |
Tupaia chinensis |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Deep sequencing of mRNA from Chinese tree shrew; Chinese tree shrew (Tupaia belangeri chinensis) is placed in Order Scandentia and embraces many unique features for a good experimental animal model. Currently, there are many attempts to employ tree shrew to establish model for a variety of human disorders such as social stress, myopia, HCV and HBV infection, and hepatocellular carcinoma .We present here a publicly available annotated genome sequence for Chinese tree shrew. Phylogenomic analysis of tree shrew and other mammalians highly supported its close affinity to primates. Characterization of key factors and signaling pathways of the nervous and immune systems in tree shrews showed that this animal had common and unique features, and had essential genetic basis for being a promising model for biomedical researches.
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| Overall design |
Analysis of ploy(A)+ RNA of different specimens:kidney, pancreas, heart, liver, brain, testis and ovary form Chinese tree shrew
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| Contributor(s) |
Fan Y, Huang Z, Zhang G, yao Y |
| Citation(s) |
23385571 |
| Submission date |
Jul 06, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
zhiyong huang |
| E-mail(s) |
huangzhiyong@genomics.org.cn
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| Organization name |
BGI-Shenzhen, Shenzhen 518083, China
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| Street address |
F5, Main Building, Beishan Industrial Zone, Beishan Road, Yantian District
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| City |
shenzhen |
| State/province |
Guangdong |
| ZIP/Postal code |
518083 |
| Country |
China |
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| Platforms (1) |
| GPL15772 |
Illumina HiSeq 2000 (Tupaia chinensis) |
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| Samples (7)
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| Relations |
| BioProject |
PRJNA170104 |
| SRA |
SRP014139 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE39150_RAW.tar |
953.6 Mb |
(http)(custom) |
TAR (of BEDGRAPH) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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