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Series GSE39357 Query DataSets for GSE39357
Status Public on Mar 01, 2013
Title ETV1 and ERG genome binding/occupancy profiling by genome tiling array
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Chromosomal rearrangements involving ETS factors, ERG and ETV1, occur frequently in prostate cancer. How these factors contribute to tumorigenesis and whether they play similar in vivo roles remain elusive. We show that ERG and ETV1 control a common transcriptional network but in an opposing fashion. In mice with ERG or ETV1 targeted to the endogenous Tmprss2 locus, either factors cooperated with Pten-loss, leading to localized cancer, but only ETV1 supported development of advanced adenocarcinoma, likely through enhancement of androgen receptor signaling and steroid biosynthesis. Indeed, ETV1 expression promotes autonomous testosterone production, which may contribute to tumor progression to castration-resistant prostate cancer. Patient data confirmed association of ETV1 expression with aggressive disease. We conclude that despite many shared targets, ERG and ETV1 contribute differently to prostate tumor biology. Hence, prostate cancers with these fusions should be considered as distinct subtypes for patient stratification and therapy.
 
Overall design Genomic targets of ERG and ETV1 transcription factors were identified by antibody-mediated and biotin-mediated ChIP-chip in human VCaP and LNCaP cells, respectively.
 
Contributor(s) Baena E, Shao Z, Li Z, Orkin SH
Citation(s) 23512661
Submission date Jul 13, 2012
Last update date Jan 21, 2015
Contact name Esther Baena
E-mail(s) esther.baena@cruk.manchester.ac.uk
Phone 617 9192054
Organization name Childrens Hospital Boston
Department Hematology/Oncology
Lab Stuart H. Orkin
Street address 300 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL5082 [Hs_PromPR] Affymetrix Human Promoter 1.0R Array
Samples (2)
GSM966557 Human-bioETV1
GSM966558 Human-ERG
This SubSeries is part of SuperSeries:
GSE39388 Distinct transcriptional programs controlled by ERG and ETV1 in prostate cells
Relations
BioProject PRJNA170748

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39357_RAW.tar 178.4 Mb (http)(custom) TAR (of BAR, BED, CEL)
Processed data provided as supplementary file

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