|
| Status |
Public on Aug 22, 2012 |
| Title |
Argonaute proteins couple chromatin silencing to alternative splicing |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by array
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
22961379 |
| Submission date |
Jul 30, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Eric Batsche |
| Phone |
(33)1 44 27 34 77
|
| Organization name |
IBPS - Institut Biologie Paris Seine
|
| Department |
B2A Biological Adaptation and Ageing - UMR8256 CNRS
|
| Lab |
Epigenetics and RNA metabolism in human diseases
|
| Street address |
7-9, Quai Saint Bernard
|
| City |
Paris |
| ZIP/Postal code |
75006 |
| Country |
France |
| |
|
| Platforms (3) |
| GPL6096 |
[MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version] |
| GPL6193 |
[MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (24)
|
| GSM978467 |
array1 for AGO2 knock-out in MEF cells, biological (gene) rep1 |
| GSM978468 |
array2 for AGO2 knock-out in MEF cells, biological (gene) rep2 |
| GSM978469 |
array3 for AGO2 knock-out in MEF cells, biological (gene) rep3 |
| GSM978470 |
array1 for Dicer knock-out in MEF cells, biological (gene) rep1 |
| GSM978471 |
array2 for Dicer knock-out in MEF cells, biological (gene) rep2 |
| GSM978472 |
array3 for Dicer knock-out in MEF cells, biological (gene) rep3 |
| GSM978473 |
array1 for wild-type MEF cells, biological (gene) rep1 |
| GSM978474 |
array2 for wild-type MEF cells, biological (gene) rep2 |
| GSM978475 |
array3 for wild-type MEF cells, biological (gene) rep3 |
| GSM978476 |
array1 for AGO2 knock-out in MEF cells, biological (exon) rep1 |
| GSM978477 |
array2 for AGO2 knock-out in MEF cells, biological (exon) rep2 |
| GSM978478 |
array3 for AGO2 knock-out in MEF cells, biological (exon) rep3 |
| GSM978479 |
array1 for Dicer knock-out in MEF cells, biological (exon) rep1 |
| GSM978480 |
array2 for Dicer knock-out in MEF cells, biological (exon) rep2 |
| GSM978481 |
array3 for Dicer knock-out in MEF cells, biological (exon) rep3 |
| GSM978482 |
array1 for wild-type MEF cells, biological (exon) rep1 |
| GSM978483 |
array2 for wild-type MEF cells, biological (exon) rep2 |
| GSM978484 |
array3 for wild-type MEF cells, biological (exon) rep3 |
| GSM978497 |
EC-input |
| GSM978498 |
EC-IgG |
| GSM978499 |
EC-AGO2 |
| GSM978500 |
Chr-input |
| GSM978501 |
Chr-IgG |
| GSM978502 |
Chr-AGO2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE39746 |
Argonaute proteins couple chromatin silencing to alternative splicing (exon array) |
| GSE39748 |
Argonaute proteins couple chromatin silencing to alternative splicing (RNA IP-Seq) |
|
| Relations |
| BioProject |
PRJNA171690 |
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