|
| Status |
Public on Sep 21, 2012 |
| Title |
RNA-seq in wild-type and glass mutant eye-antennal discs in Drosophila melanogaster |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The aim of this data set is to perform a differential expression analysis between wild type eye-antennal imaginal disc and discs that are homozygous glass mutant gl[60j]. This data set is used to validate Glass target gene predictions identified by i-cisTarget on a set of conserved eye-specific genes.
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| |
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| Overall design |
RNA-seq was performed in eye-antennal imaginal discs of two D.melanogaster wild-type strains (Canton S and strain RAL-208 (Jordan et al. 2007, Ayroles et al. 2009)), representing two biological replicates; and in glass mutant (gl[60j]) discs for two technical replicates.
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| |
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| Contributor(s) |
Aerts S |
| Citation(s) |
23070853 |
| Submission date |
Jul 31, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Stein Aerts |
| Organization name |
KULeuven
|
| Department |
Center for Human Genetics
|
| Lab |
Laboratory of Computational Biology
|
| Street address |
Herestraat 49
|
| City |
Leuven |
| ZIP/Postal code |
3000 |
| Country |
Belgium |
| |
|
| Platforms (1) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
|
| Samples (4)
|
| GSM978987 |
RNA_seq_eye-antennal_imaginal_disc_wild-type [CantonS] |
| GSM978988 |
RNA_seq_eye-antennal_imaginal_disc_wild-type [RAL-208] |
| GSM978989 |
RNA_seq_eye-antennal_imaginal_disc_gl[60j]_rep1 |
| GSM978990 |
RNA_seq_eye-antennal_imaginal_disc_gl[60j]_rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE39784 |
Tag-seq in eye-antennal and wing imaginal discs of D.melanogaster, D.yakuba, and D.virilis; RNA-seq in wild-type and glass mutant D.melanogaster eye-antennal imaginal discs. |
|
| Relations |
| SRA |
SRP014636 |
| BioProject |
PRJNA171885 |
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