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GEO accession:
Series GSE39860
Query DataSets for GSE39860
Status
Public on Aug 31, 2012
Title
Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Koike N
,
Yoo S
,
Huang H
,
Kumar V
,
Lee C
,
Kim T
,
Takahashi JS
Citation(s)
22936566
Submission date
Aug 03, 2012
Last update date
May 15, 2019
Contact name
Joseph S Takahashi
E-mail(s)
joseph.takahashi@utsouthwestern.edu
Phone
214-648-1876
Organization name
University of Texas Southwestern Medical Center
Department
HHMI, Neuroscience
Lab
Joseph S. Takahashi
Street address
5323 Harry Hines Blvd., NA4.118
City
Dallas
State/province
TX
ZIP/Postal code
75390-9111
Country
USA
Platforms (2)
GPL14602
AB SOLiD 4 System (Mus musculus)
GPL15907
AB 5500xl Genetic Analyzer (Mus musculus)
Samples (150)
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More...
GSM982688
Sample 1_BMAL1 ChIP-seq
GSM982689
Sample 2_BMAL1 ChIP-seq
GSM982690
Sample 3_BMAL1 ChIP-seq
GSM982691
Sample 4_BMAL1 ChIP-seq
GSM982692
Sample 5_BMAL1 ChIP-seq
GSM982693
Sample 6_BMAL1 ChIP-seq
GSM982694
Sample 7_BMAL1 ChIP-seq
GSM982695
Sample 8_Input DNA for BMAL1 ChIP-seq
GSM982696
Sample 9_BMAL1 ChIP-seq-2cycle
GSM982697
Sample 10_BMAL1 ChIP-seq-2cycle
GSM982698
Sample 11_BMAL1 ChIP-seq-2cycle
GSM982699
Sample 12_BMAL1 ChIP-seq-2cycle
GSM982700
Sample 13_BMAL1 ChIP-seq-2cycle
GSM982701
Sample 14_BMAL1 ChIP-seq-2cycle
GSM982702
Sample 15_BMAL1 ChIP-seq-2cycle
GSM982703
Sample 16_BMAL1 ChIP-seq-2cycle
GSM982704
Sample 17_BMAL1 ChIP-seq-2cycle
GSM982705
Sample 18_BMAL1 ChIP-seq-2cycle
GSM982706
Sample 19_BMAL1 ChIP-seq-2cycle
GSM982707
Sample 20_BMAL1 ChIP-seq-2cycle
GSM982708
Sample 21_BMAL1 ChIP-seq-2cycle
GSM982709
Sample 22_Input DNA for BMAL1 ChIP-seq_2cycle
GSM982710
Sample 23_Input DNA for BMAL1 ChIP-seq_2cycle
GSM982711
Sample 24_CLOCK ChIP-sseq
GSM982712
Sample 25_CLOCK ChIP-sseq
GSM982713
Sample 26_CLOCK ChIP-sseq
GSM982714
Sample 27_CLOCK ChIP-sseq
GSM982715
Sample 28_CLOCK ChIP-sseq
GSM982716
Sample 29_CLOCK ChIP-sseq
GSM982717
Sample 30_CLOCK ChIP-sseq
GSM982718
Sample 31_NPAS2 ChIP-seq
GSM982719
Sample 32_NPAS2 ChIP-seq
GSM982720
Sample 33_NPAS2 ChIP-seq
GSM982721
Sample 34_NPAS2 ChIP-seq
GSM982722
Sample 35_NPAS2 ChIP-seq
GSM982723
Sample 36_NPAS2 ChIP-seq
GSM982724
Sample 37_Input DNA for CLOCK ChIP-seq
GSM982725
Sample 38_Input DNA for NPAS2 ChIP-seq
GSM982726
Sample 39_PER1 Chip-sseq
GSM982727
Sample 40_PER1 Chip-sseq
GSM982728
Sample 41_PER1 Chip-sseq
GSM982729
Sample 42_PER1 Chip-sseq
GSM982730
Sample 43_PER1 Chip-sseq
GSM982731
Sample 44_PER1 Chip-sseq
GSM982732
Sample 45_PER1 Chip-sseq
GSM982733
Sample 46_PER2 ChIP-seq
GSM982734
Sample 47_PER2 ChIP-seq
GSM982735
Sample 48_PER2 ChIP-seq
GSM982736
Sample 49_PER2 ChIP-seq
GSM982737
Sample 50_PER2 ChIP-seq
GSM982738
Sample 51_PER2 ChIP-seq
GSM982739
Sample 52_PER2 ChIP-seq
GSM982740
Sample 53_Input DNA for PER1/PER2 ChIP-seq
GSM982741
Sample 54_CRY1 ChIP-seq
GSM982742
Sample 55_CRY1 ChIP-seq
GSM982743
Sample 56_CRY1 ChIP-seq
GSM982744
Sample 57_CRY1 ChIP-seq
GSM982745
Sample 58_CRY1 ChIP-seq
GSM982746
Sample 59_CRY1 ChIP-seq
GSM982747
Sample 60_CRY1 ChIP-seq
GSM982748
Sample 61_CRY2 ChIP-seq
GSM982749
Sample 62_CRY2 ChIP-seq
GSM982750
Sample 63_CRY2 ChIP-seq
GSM982751
Sample 64_CRY2 ChIP-seq
GSM982752
Sample 65_CRY2 ChIP-seq
GSM982753
Sample 66_CRY2 ChIP-seq
GSM982754
Sample 67_CRY2 ChIP-seq
GSM982755
Sample 68_Input DNA for CRY1/CRY2 ChIP-seq
GSM982756
Sample 69_CBP ChIP-seq
GSM982757
Sample 70_CBP ChIP-seq
GSM982758
Sample 71_CBP ChIP-seq
GSM982759
Sample 72_CBP ChIP-seq
GSM982760
Sample 73_CBP ChIP-seq
GSM982761
Sample 74_CBP ChIP-seq
GSM982762
Sample 75_p300 ChIP-sseq
GSM982763
Sample 76_p300 ChIP-sseq
GSM982764
Sample 77_p300 ChIP-sseq
GSM982765
Sample 78_p300 ChIP-sseq
GSM982766
Sample 79_p300 ChIP-sseq
GSM982767
Sample 80_p300 ChIP-sseq
GSM982768
Sample 81_Input DNA for CBP ChIP-sseq
GSM982769
Sample 82_Input DNA for p300 ChIP-seq
GSM982770
Sample 83_RNAPII-8WG16 ChIP-seq
GSM982771
Sample 84_RNAPII-8WG16 ChIP-seq
GSM982772
Sample 85_RNAPII-8WG16 ChIP-seq
GSM982773
Sample 86_RNAPII-8WG16 ChIP-seq
GSM982774
Sample 87_RNAPII-8WG16 ChIP-seq
GSM982775
Sample 88_RNAPII-8WG16 ChIP-seq
GSM982776
Sample 89_Input DNA for RNAPII-8WG16 ChIP-seq
GSM982777
Sample 90_RNAPII-Ser5P ChIP-seq
GSM982778
Sample 91_RNAPII-Ser5P ChIP-seq
GSM982779
Sample 92_RNAPII-Ser5P ChIP-seq
GSM982780
Sample 93_RNAPII-Ser5P ChIP-seq
GSM982781
Sample 94_RNAPII-Ser5P ChIP-seq
GSM982782
Sample 95_RNAPII-Ser5P ChIP-seq
GSM982783
Sample 96_Input DNA for RNAPII-Ser5P ChIP-seq
GSM982784
Sample 97_H3K4me1 ChIP-seq
GSM982785
Sample 98_H3K4me1 ChIP-seq
GSM982786
Sample 99_H3K4me1 ChIP-seq
GSM982787
Sample 100_H3K4me1 ChIP-seq
GSM982788
Sample 101_H3K4me1 ChIP-seq
GSM982789
Sample 102_H3K4me1 ChIP-seq
GSM982790
Sample 103_Input DNA for H3K4me1 ChIP-seq
GSM982791
Sample 104_H3K4me3 ChIP-seq
GSM982792
Sample 105_H3K4me3 ChIP-seq
GSM982793
Sample 106_H3K4me3 ChIP-seq
GSM982794
Sample 107_H3K4me3 ChIP-seq
GSM982795
Sample 108_H3K4me3 ChIP-seq
GSM982796
Sample 109_H3K4me3 ChIP-seq
GSM982797
Sample 110_Input DNA for H3K4me3 ChIP-seq
GSM982798
Sample 111_H3K9ac ChIP-seq
GSM982799
Sample 112_H3K9ac ChIP-seq
GSM982800
Sample 113_H3K9ac ChIP-seq
GSM982801
Sample 114_H3K9ac ChIP-seq
GSM982802
Sample 115_H3K9ac ChIP-seq
GSM982803
Sample 116_H3K9ac ChIP-seq
GSM982804
Sample 117_Input DNA for H3K9ac ChIP-seq
GSM982805
Sample 118_H3K27ac ChIP-seq
GSM982806
Sample 119_H3K27ac ChIP-seq
GSM982807
Sample 120_H3K27ac ChIP-seq
GSM982808
Sample 121_H3K27ac ChIP-seq
GSM982809
Sample 122_H3K27ac ChIP-seq
GSM982810
Sample 123_H3K27ac ChIP-seq
GSM982811
Sample 124_Input DNA for H3K27ac ChIP-seq
GSM982812
Sample 125_H3K36me3 ChIP-seq
GSM982813
Sample 126_H3K36me3 ChIP-seq
GSM982814
Sample 127_H3K36me3 ChIP-seq
GSM982815
Sample 128_H3K36me3 ChIP-seq
GSM982816
Sample 129_H3K36me3 ChIP-seq
GSM982817
Sample 130_H3K36me3 ChIP-seq
GSM982818
Sample 131_H3K79me2 ChIP-seq
GSM982819
Sample 132_H3K79me2 ChIP-seq
GSM982820
Sample 133_H3K79me2 ChIP-seq
GSM982821
Sample 134_H3K79me2 ChIP-seq
GSM982822
Sample 135_H3K79me2 ChIP-seq
GSM982823
Sample 136_H3K79me2 ChIP-seq
GSM982824
Sample 137_Input DNA for H3K36me3/K79me2 ChIP-seq #1
GSM982825
Sample 138_Input DNA for H3K36me3/K79me2 ChIP-seq #2
GSM982826
Sample 1_whole transcriptome (RNA-seq)
GSM982827
Sample 2_whole transcriptome (RNA-seq)
GSM982828
Sample 3_whole transcriptome (RNA-seq)
GSM982829
Sample 4_whole transcriptome (RNA-seq)
GSM982830
Sample 5_whole transcriptome (RNA-seq)
GSM982831
Sample 6_whole transcriptome (RNA-seq)
GSM982832
Sample 7_whole transcriptome (RNA-seq)
GSM982833
Sample 8_whole transcriptome (RNA-seq)
GSM982834
Sample 9_whole transcriptome (RNA-seq)
GSM982835
Sample 10_whole transcriptome (RNA-seq)
GSM982836
Sample 11_whole transcriptome (RNA-seq)
GSM982837
Sample 12_whole transcriptome (RNA-seq)
This SuperSeries is composed of the following SubSeries:
GSE39977
Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals [ChIP-seq]
GSE39978
Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals [RNA-seq]
Relations
BioProject
PRJNA172195
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE39860_RAW.tar
57.5 Gb
(http)
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TAR (of BED, BW)
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