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Series GSE39864 Query DataSets for GSE39864
Status Public on Aug 28, 2012
Title Treg specific Gata3 knock out array
Organism Mus musculus
Experiment type Expression profiling by array
Summary The transcription factor Foxp3 is indispensible for the differentiation and function of regulatory T cells (Treg cells). To gain insights into the molecular mechanisms of Foxp3 mediated gene expression we purified Foxp3 complexes and explored their composition. Biochemical and mass-spectrometric analyses revealed that Foxp3 forms multi-protein complexes of 400-800 kDa or larger and identified 361 associated proteins ~30% of which are transcription-related. Foxp3 directly regulates expression of a large proportion of the genes encoding its co-factors. Reciprocally, some transcription factor partners of Foxp3 facilitate its expression. Functional analysis of Foxp3 cooperation with one such partner, Gata3, provided further evidence for a network of transcriptional regulation afforded by Foxp3 and its associates to control distinct aspects of Treg cell biology.
Gene expression profile of Treg specific knock-out of Gata3 vs. their littermate controls were analyzed to gain insight into Gata3 dependendent genes in Treg cells.
 
Overall design Treg cells (CD4+CD25+YFP+) sorted from Gata3F/FFoxp3YFP-Cre and Gata3F/+Foxp3YFP-Cre mice (three mice in each group) followed by microarray analyses.
 
Contributor(s) Rudra D, Arvey A, Rudensky A
Citation(s) 22922362
Submission date Aug 03, 2012
Last update date May 04, 2018
Contact name Aaron Arvey
E-mail(s) aarvey@cbio.mskcc.org
Organization name Memorial Sloan-Kettering Cancer Center
Street address 415 E 68th St ZRC 1441
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL8321 [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array
Samples (6)
GSM980505 WT_1
GSM980506 WT_2
GSM980507 WT_3
Relations
BioProject PRJNA171890

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39864_RAW.tar 11.3 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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