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| Status |
Public on Sep 05, 2012 |
| Title |
Lentiviral transduction of CD34+ cells induces genome-wide epigenetic modifications |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by array
|
| Summary |
Human CD34+ cells were cultured shortly in the presence of cytokines then with a gene transfer lentiviral vector (LV) expected to transduce cells but to have otherwise limited biological effects on the cells. At the end of the culture, the population of cells remained largely similar at the phenotypic level but some epigenetic changes were evident. Exposure of CD34+ cells to cytokines caused genome-wide DNA methylation changes. Surprisingly, the LV caused additional and distinct effects. Large-scale genomic DNA methylation analysis showed that balanced methylation changes occurred in about 200 genes following culture of CD34+ cells in the presence of cytokines but 900 genes were modified following addition of the LV, predominantly increasing CpG methylation. Epigenetic effects resulting from ex vivo culture and from the use of LV may constitute previously unsuspected sources of biological effects in stem cells and may provide new biomarkers to rationally optimize gene and cell therapy protocols.
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| Overall design |
3 replicates of control unstimulated (Group 1), cytokine stimulated, cytokine strimulated and treated with polybren and cytokine stimulated and transduced with lentiviral vector coding for GFP in the presence of polybren were analysed
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| Contributor(s) |
Yamagata Y, Parietti V, Stockholm D, Corre G, Poinsignon C, Touleimat N, Delafoy D, Besse C, Tost J, Galy A, Paldi A |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Sep 05, 2012 |
| Last update date |
Jan 02, 2015 |
| Contact name |
NIZAR TOULEIMAT |
| E-mail(s) |
nizar.touleimat@cng.fr, tost@cng.fr, paldi@genethon.fr
|
| Phone |
++33-(0)1 6087 8423
|
| Fax |
++33-(0)1 6087 8485
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| Organization name |
CEA/Institut de Génomique and Généthon
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| Street address |
2 rue Gaston Crémieux
|
| City |
Evry |
| ZIP/Postal code |
F-91057 |
| Country |
France |
| |
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| Platforms (1) |
| GPL8490 |
Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2) |
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| Samples (12)
|
| GSM998395 |
CD34+ stimulated 1 |
| GSM998396 |
CD34+ stimulated 2 |
| GSM998397 |
CD34+ stimulated 3 |
| GSM998398 |
CD34+ stimulated and polybren treated 1 |
| GSM998399 |
CD34+ stimulated and polybren treated 2 |
| GSM998400 |
CD34+ stimulated and polybren treated 3 |
| GSM998401 |
CD34+ stimulated Polybren treated LV transduced 1 |
| GSM998402 |
CD34+ stimulated Polybren treated LV transduced 2 |
| GSM998403 |
CD34+ stimulated Polybren treated LV transduced 3 |
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| Relations |
| BioProject |
PRJNA174430 |
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