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Series GSE40766 Query DataSets for GSE40766
Status Public on Jan 07, 2013
Title Genome-wide mapping of FOXM1 binding reveals co-binding with oestrogen receptor alpha in breast cancer cells (expression)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The forkhead transcription factor FOXM1 is a key regulator of the cell cycle and is overexpressed in cancer. Increased levels of FOXM1 are associated with both poor prognosis and oestrogen receptor (ERalpha) status in primary breast cancer. In this study, we map FOXM1 binding genome wide in both ERalpha-positive (MCF-7) and -negative (MDA-MB-231) breast cancer cells. We identify a common set of FOXM1 binding events at cell cycle-regulating genes, but in addition, in MCF-7 cells we find a high level of concordance with ERalpha-binding regions. FOXM1 binding at these co-binding sites is dependent on ERalpha binding, as depletion of ER protein levels reduced FOXM1 binding. FOXM1 interacts directly with both ERalpha co-activator CARM1 and is required for H3 arginine methylation at the ERalpha complex. Inhibition of FOXM1 activity with the ligand thiostrepton resulted in decreased FOXM1 binding at cca. 1400 sites genome wide and reduced expression of genes correlated with poor prognosis in ERalpha-positive tumour samples. These data demonstrate a novel role for the forkhead protein FOXM1 as an ERalpha cofactor and provide insight into the role of FOXM1 in ERalpha-positive breast cancer.
 
Overall design MCF-7 cells were treated with either thiostrepton or DMSO for 6 hr. Each treatment was carried out in replicates of 6.
 
Contributor(s) Sanders DA, Ross-Innes CS, Beraldi D, Carroll JS, Balsubramanian S
Citation(s) 23347430
Submission date Sep 10, 2012
Last update date Aug 13, 2018
Contact name Dario Beraldi
E-mail(s) dario.beraldi@cruk.cam.ac.uk
Organization name Cambridge Research Institute
Street address Robinson Way
City Cambridge
ZIP/Postal code CB2 0RE
Country United Kingdom
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (12)
GSM1001051 Thiostrepton_4
GSM1001052 DMSO_1
GSM1001053 Thiostrepton_3
This SubSeries is part of SuperSeries:
GSE40767 Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells
Relations
BioProject PRJNA174828

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40766_RAW.tar 26.2 Mb (http)(custom) TAR
GSE40766_non-normalized.txt.gz 3.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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