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Series GSE41169 Query DataSets for GSE41169
Status Public on Oct 19, 2012
Title Blood DNA methylation profiles in a Dutch population
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of whole blood in schizophrenia patients and healthy subjects of different ages. The Illumina Infinium 450k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 480,000 CpGs. Dataset included 62 schizophrenia patients and 33 healthy subjects from Dutch descent.
 
Overall design Bisulphite converted DNA from the 96 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip. Publication: Steve Horvath, Yafeng Zhang, Peter Langfelder, René S. Kahn, Marco P.M. Boks, Kristel van Eijk, Leonard H. van den Berg, Roel A. Ophoff. Aging effects on DNA methylation modules in human brain and blood tissue. Genome Biology. Special Edition.
The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
 
Contributor(s) Ophoff R, Horvath S
Citation(s) 23034122, 25969563
Submission date Sep 26, 2012
Last update date Jul 06, 2022
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (95)
GSM1009660 genomic DNA from whole blood 6
GSM1009661 genomic DNA from whole blood 7
GSM1009662 genomic DNA from whole blood 8
Relations
Reanalyzed by GSE207605
BioProject PRJNA176018

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41169_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table
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