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Series GSE41346 Query DataSets for GSE41346
Status Public on Oct 04, 2012
Title Paired End CNV Kc 167
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome variation profiling by high throughput sequencing
Summary modENCODE_submission_5523
This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: Analysis of copy number variation across modENCODE Drosophila cell line by high throughput sequencing. We observe numerous copy number variations for the different cell lines, with each cell line having a distinct ploidy signature.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design EXPERIMENT TYPE: deep sequencing analysis. BIOLOGICAL SOURCE: Cell Line: Kc167; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: se/e; Sex: Female; EXPERIMENTAL FACTORS: Cell Line Kc167
Web link http://www.modencode.org
http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/info/ENCODE.html
 
Contributor(s) MacAlpine D, MacAlpine H, Prinz J
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63463
Submission date Oct 04, 2012
Last update date May 15, 2019
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (2)
GSM1015336 KC167 PE CNV Replicate 1 extraction1_seq1 aliquote 1
GSM1015337 KC167 PE CNV Replicate 2 extraction2_seq1 aliquote 1
Relations
SRA SRP016077

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41346_KC-PE-CNV.wig.gz 100.9 Kb (ftp)(http) WIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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