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Series GSE41980 Query DataSets for GSE41980
Status Public on Nov 01, 2013
Title Mitocans target tryptophan metabolism to remove the mimicry of tumour-initiating cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Following therapy, tumour-initiating cells (TICs) survive and give rise to second-line tumours. Gene set enrichment analysis of microarray data and microRNA analysis confirmed the validity of spheroid cultures as models of TICs for breast and prostate cancer and mesothelioma cell lines. Pathway analysis revealed increased Trp metabolism in all types of TICs with indoleamine 2,3-dioxygenase (IDO) as the rate-limiting enzyme. TICs also expressed higher levels of the Trp uptake system consisting of CD98 and LAT1 with functional consequences. Mitocans, represented by vitamin E (VE) analogues, suppressed IDO1 in TICs with functional mitochondrial complex II, a target for the agents. IDO1 expression was regulated via a mechanism involving both transcriptional and post-transcriptional mechanisms. IDO1 increase and its suppression by VE analogues were replicated in TICs from primary human glioblastomas. Our work points to Trp metabolism as a novel mechanism of TICs to bypass the immune surveillance and to VE analogues as agents that remove this ‘mimicry’.
 
Overall design Total RNA obtained from from breast cancer (MCF7), mesothelioma (IstMes2) and prostate cancer (LNCaP) adherent cell lines was compared to their corresponding sphere cultures
 
Contributor(s) Stapelberg M, Neuzil J
Citation(s) 24145120
Submission date Nov 01, 2012
Last update date Aug 16, 2018
Contact name Michael Peter Stapelberg
E-mail(s) pfm.stapelberg@gmail.com
Organization name Griffith University
Street address Parklands Drive
City Gold Coast
State/province Queensland
ZIP/Postal code 4222
Country Australia
 
Platforms (1)
GPL6947 Illumina HumanHT-12 V3.0 expression beadchip
Samples (28)
GSM1029440 Breast Cancer MCF-7 Adherent cells 1
GSM1029441 Breast Cancer MCF-7 Adherent cells 2
GSM1029442 Breast Cancer MCF-7 Adherent cells 3
Relations
BioProject PRJNA178642

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41980_RAW.tar 6.2 Mb (http)(custom) TAR
GSE41980_non-normalized.txt.gz 6.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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