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Series GSE42372 Query DataSets for GSE42372
Status Public on Jan 30, 2014
Title Methylation profiling classifies HIV-associated lymphoma
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary HIV-positive patients have a higher risk of non-Hodgkin's lymphoma with poor prognostic features. To characterize features of HIV-associated lymphoma, we compared the genome-wide DNA methylation profiles in between 11 HIV-associated and 20 non-HIV lymphoma samples by Illumina Infinium HumanMethylation450 BeadChip v1.0.
 
Overall design Bisulfite-converted DNA from the 31 samples were analyzed to obtain the genome-wide methylation profile by using Illumina Infinium HumanMethylation450 BeadChip microarray.
 
Contributor(s) Matsunaga A, Hishima T, Tanaka N, Yamazaki M, Motizuki M, Ishizaka Y, Shimura M, Hagiwara S
Citation(s) 24335480
Submission date Nov 19, 2012
Last update date Mar 22, 2019
Contact name Akihiro Matsunaga
E-mail(s) amatsunaga@ri.ncgm.go.jp
Phone +81-3-3202-7181
Organization name National Center for Global Health and Medicine
Department Intractable Disease
Street address 1-21-1, Toyama
City Shinjuku
State/province Tokyo
ZIP/Postal code 162-8655
Country Japan
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (31)
GSM1038400 genomic DNA from HIV-associated lymphoma 1
GSM1038401 genomic DNA from HIV-associated lymphoma 2
GSM1038402 genomic DNA from HIV-associated lymphoma 3
Relations
BioProject PRJNA181202

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42372_RAW.tar 183.1 Mb (http)(custom) TAR
GSE42372_RAW_data.txt.gz 239.6 Mb (ftp)(http) TXT
GSE42372_signal_intensities.txt.gz 127.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
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