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Series GSE42386 Query DataSets for GSE42386
Status Public on Mar 01, 2013
Title Analysis of DNA methylation dynamics at Alu elements during human B cell activation
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Paired-end sequencing of methylated DNA fragments in B cell subsets revealed widespread loss of methylation at Alu elements upon B cell activation.
 
Overall design DNA methylation pattern was analyzed in purified naïve and germinal-center B cells derived from 1 patient
 
Contributor(s) Lai AY, Wade PA
Citation(s) 24013550
Submission date Nov 19, 2012
Last update date May 15, 2019
Contact name Paul A Wade
E-mail(s) wadep2@niehs.nih.gov
Phone 919-541-3392
Organization name NIEHS
Department Laboratory of Molecular Carcinogenesis
Street address 111 TW Alexander Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM1038649 naïve B cells
GSM1038650 germinal-center B cells
Relations
BioProject PRJNA181260
SRA SRP017236

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42386_RAW.tar 982.6 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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