|
| Status |
Public on Aug 13, 2014 |
| Title |
Exon-level expression profiling of normal colonic mucosa samples. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
These samples have been analyzed for global alternative splicing variation on exon-level expression data using the FIRMA algorithm. We have identified and described transcriptome instability as a genome-wide, pre-mRNA splicing related characteristic of solid cancers.
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| |
|
| Overall design |
This Series consists of 19 normal colonic mucosa samples from colorectal cancer patients, and is an amendment to a larger series of colorectal cancer and adjacent normal colonic mucosa samples analyzed for gene expression at the exon-level (GSE24550).
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| |
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| Contributor(s) |
Sveen A, Ågesen TH, Nesbakken A, Lothe RA, Skotheim RI |
| Citation(s) |
25109687 |
| Submission date |
Dec 03, 2012 |
| Last update date |
Feb 18, 2019 |
| Contact name |
Anita Sveen |
| E-mail(s) |
anita.sveen@rr-research.no
|
| Organization name |
Institute for Cancer Research, Oslo University Hospital
|
| Department |
Department of Molecular Oncology
|
| Street address |
P.O.Box 4953, Nydalen
|
| City |
Oslo |
| ZIP/Postal code |
NO-0424 |
| Country |
Norway |
| |
|
| Platforms (1) |
| GPL5175 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] |
|
| Samples (19)
|
| GSM714419 |
normal colonic mucosa sample AUS2_003_norm |
| GSM714420 |
normal colonic mucosa sample AUS2_012_norm |
| GSM714421 |
normal colonic mucosa sample AUS2_017_norm |
| GSM714422 |
normal colonic mucosa sample AUS2_029_norm |
| GSM714423 |
normal colonic mucosa sample AUS2_036_norm |
| GSM714424 |
normal colonic mucosa sample AUS2_038_p1961_NM |
| GSM714425 |
normal colonic mucosa sample AUS2_041_norm |
| GSM714426 |
normal colonic mucosa sample AUS2_044_p1962_NM |
| GSM714427 |
normal colonic mucosa sample AUS2_053_norm |
| GSM714428 |
normal colonic mucosa sample AUS2_054_norm |
| GSM714429 |
normal colonic mucosa sample AUS2_068_p1836_NM |
| GSM714430 |
normal colonic mucosa sample AUS2_072_p1965_NM |
| GSM714431 |
normal colonic mucosa sample AUS2_100_p1840_NM |
| GSM1048009 |
normal colonic mucosa sample AUS2_035_p1834_NM |
| GSM1048010 |
normal colonic mucosa sample AUS2_045_p1835_NM |
| GSM1048011 |
normal colonic mucosa sample AUS2_074_p1837_NM |
| GSM1048012 |
normal colonic mucosa sample AUS2_077_p1966_NM |
| GSM1048013 |
normal colonic mucosa sample AUS2_107_p1841_NM |
| GSM1048014 |
normal colonic mucosa sample AUS2_131_p1844_NM |
|
| Relations |
| BioProject |
PRJNA182912 |
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