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| Status |
Public on Aug 22, 2013 |
| Title |
Expression data from open bariatric surgery patients - various adipose samples |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Diabetes and obesity are widespread diseases with signifciant socioeconomic implications. We used three different types of human adipose tissue (epigastric, visceral, and subcutaneous) in order to determine differences in global gene expression between these adipose depots in severely obese patients.
In this dataset, we include the expression data obtained from three types of adipose tissue; epigastric, subcutaneous, and visceral all obtained through open gastric bypass surgery.
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| Overall design |
18 total samples were analyzed. Tissues were paired together to run on one genechip, with three pairs of epigastric, three pairs of subcutaneous, and three pairs of visceral were ran on nine genechips. Comparisons of gene expression in the form of fold changes between pairs of adipose types (i.e., subcutaneous/epigastric, visceral/epigastric, and subcutaneous/visceral) were completed by Spotfire Analysis.
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| Citation(s) |
23949615 |
| Submission date |
Dec 04, 2012 |
| Last update date |
Feb 18, 2019 |
| Contact name |
George Argyropoulos |
| E-mail(s) |
gargyropoulos1@geisinger.edu
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| Organization name |
Geisinger Medical Center
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| Department |
Weis Center for Research
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| Lab |
Diabetes/ Obesity
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| Street address |
100 North Academy Ave
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| City |
Danville |
| State/province |
Pa |
| ZIP/Postal code |
17822 |
| Country |
USA |
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| Platforms (1) |
| GPL5175 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] |
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| Samples (9)
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| GSM1048428 |
Epigastric fat samples 1 and 2, biological replicate 1 |
| GSM1048429 |
Epigastric fat samples 3 and 4, biological replicate 2 |
| GSM1048430 |
Epigastric fat samples 5 and 6, biological replicate 3 |
| GSM1048431 |
Subcutaneous fast samples 1 and 2, biological replicate 1 |
| GSM1048432 |
Subcutaneous fast samples 3 and 4, biological replicate 2 |
| GSM1048433 |
Subcutaneous fast samples 5 and 6, biological replicate 3 |
| GSM1048434 |
Visceral fat samples 1 and 2, biological replicate 1 |
| GSM1048435 |
Visceral fat samples 3 and 4, biological replicate 2 |
| GSM1048436 |
Visceral fat samples 5 and 6, biological replicate 3 |
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| Relations |
| BioProject |
PRJNA182922 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE42715_RAW.tar |
204.5 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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