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Series GSE43218 Query DataSets for GSE43218
Status Public on Dec 31, 2013
Title Gene expression profile changes in HDAC6 knockdown HT1080 cells cells after TLR3 stimulation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary TLR3 stimulation by extracellular dsRNA (e.g. polyIC) induces expression of numerous genes. The knockdown of HDAC6 prior to TLR3 stimulation leads to an ablation of expression of IRF-3-dependent genes.
 
Overall design Total RNA extracted from HT1080 cells expressing control-shRNA or HDAC6-shRNA, after 6 h of treatment with dsRNA (polyIC), compared to untreated controls
 
Contributor(s) Sen GC
Citation(s) 23532979
Submission date Dec 31, 2012
Last update date Mar 20, 2017
Contact name Ganes C. Sen
E-mail(s) seng@ccf.org
Organization name Cleveland Clinic
Street address 9500 Euclid Avenue NE-20
City Cleveland
ZIP/Postal code 44195
Country USA
 
Platforms (1)
GPL6883 Illumina HumanRef-8 v3.0 expression beadchip
Samples (4)
GSM1058795 shcontrol-HT1080_untreated_rep1
GSM1058796 shcontrol-HT1080_dsRNA-treated_rep1
GSM1058797 shHDAC6-HT1080_untreated_rep1
Relations
BioProject PRJNA184997

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43218_RAW.tar 3.9 Mb (http)(custom) TAR
GSE43218_non_normalized.txt.gz 1.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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