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Series GSE43893 Query DataSets for GSE43893
Status Public on Oct 22, 2013
Title RNA sequencing of SHP -/- knockout mouse transcriptome
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Goal of this study is to identify annotated and non-annotated genes transcriptionally regulated by small heterodime partner (SHP, Nrob2) expression.
 
Overall design Liver 5' capped RNA samples from three SHP -/- and three wild type mice were sequenced with Illumina GAII sequencer.
 
Contributor(s) Wang L, Hagedorn C
Citation(s) 23812039, 27486225
Submission date Jan 30, 2013
Last update date May 15, 2019
Contact name Don Delker
E-mail(s) don.delker@hsc.utah.edu
Organization name University of Utah
Department School of Medicine
Street address 30 North 1900 East
City Salt Lake City
State/province Utah
ZIP/Postal code 84132
Country USA
 
Platforms (1)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
Samples (6)
GSM1074095 Wild type replicate 1
GSM1074096 Wild type replicate 2
GSM1074097 Wild type replicate 3
Relations
BioProject PRJNA188074
SRA SRP018291

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43893_SHP_RNA-Seq_Processed.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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