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Series GSE44048 Query DataSets for GSE44048
Status Public on Jul 24, 2013
Title Human glioma cell line T98G: BAP-PCBP2 RIP vs. BAP-GFP RIP (Control)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary RIP-Chip analysis of PCBP2 and identification of preferentially associated mRNAs. T98G cells were transfected transiently with BAP-tagged constructs. BAP-tagged proteins were biotinylated in vivo by the co-transfected hBirA enzyme. RNPs were recovered via precipitation with Steptavidin-sepharose beads. Finally, RNAs were purified and analyzed on microarrays. BAP-GFP as control was used in three independent sets of experiments.
 
Overall design Two-condition experiment, BAP-PCBP2 vs. BAP-GFP cells. Biological replicates: 3 BAP-PCBP2 replicates, 3 BAP-GFP (Control) replicates
 
Contributor(s) Han W
Citation(s) 23585479
Submission date Feb 04, 2013
Last update date Jan 23, 2019
Contact name zhong xiao peng
Organization name Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences
Street address 5 Dong Dan San Tiao
City Beijing
ZIP/Postal code 100005
Country China
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (3)
GSM1077226 T98G cell BAP-PCBP2 Replicate 1
GSM1077227 T98G cell BAP-PCBP2 Replicate 2
GSM1077228 T98G cell BAP-PCBP2 Replicate 3
Relations
BioProject PRJNA188445

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44048_RAW.tar 46.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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