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Series GSE44106 Query DataSets for GSE44106
Status Public on Feb 07, 2013
Title MiRNA/gene profiling unveils early molecular changes and NRF2 activation in a rat model recapitulating human HCC
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Studies on gene and/or microRNA (miRNA) dysregulation in the early stages of hepatocarcinogenesis are hampered by the difficulty of diagnosing early lesions in humans. Experimental models recapitulating human hepatocellular carcinoma (HCC) are then entailed to perform this analysis. We performed miRNA and gene expression profiling to characterize the molecular events involved in the multistep process of hepatocarcinogenesis in the Resistant-Hepatocyte rat model. A high percentage of dysregulated miRNAs/genes in HCC were similarly altered in early preneoplastic lesions positive for the stem/progenitor cell marker cytokeratin-19, indicating that several HCC-associated alterations occur from the very beginning of the carcinogenic process. Our analysis also identified miRNA/gene-target networks aberrantly activated at the initial stage of hepatocarcinogenesis. Activation of the NRF2 pathway and up-regulation of the miR-200 family were among the most prominent changes. The relevance of these alterations in the development of HCC was confirmed by the observation that NRF2 silencing impaired while miR-200a overexpression promoted HCC cell proliferation in vitro. Moreover, T3-induced in vivo inhibition of the NRF2 pathway accompanied the regression of cytokeratin-19 positive nodules, suggesting that activation of this transcription factor contributes to the onset and progression of preneoplastic lesions towards malignancy. The finding that 78% of genes and 57% of dysregulated miRNAs in rat HCC have been previously associated to human HCC as well underlines the translational value of our results. Conclusions: this study indicates that most of the molecular changes found in HCC occur in the very early stages of hepatocarcinogenesis. Among these, the NRF2 pathway plays a relevant role and may represent a new therapeutic target.
 
Overall design 20 nodules (10 weeks after initiation with DENA), 4 adenomas (10 months), 5 eHCCs (10 months) and 9 aHCCs (14 months) were dissected. 10 controls also included.
 
Contributor(s) Sulas P
Citation(s) 23857252
Submission date Feb 06, 2013
Last update date Jul 29, 2014
Contact name Davide Cora'
E-mail(s) davide.cora@ircc.it, davide.cora@uniupo.it
Phone +390321660631
Organization name Piemonte Orientale University and IRCCS Candiolo Cancer Institute
Department Dept. of Oncology
Lab Vascular Oncology
Street address Str. Prov. 142 Km. 3.95
City Candiolo
State/province TO
ZIP/Postal code I-10060
Country Italy
 
Platforms (1)
GPL6101 Illumina ratRef-12 v1.0 expression beadchip
Samples (48)
GSM1079038 krt-19+ nodules (sample 1)
GSM1079039 krt-19+ nodules (sample 2)
GSM1079040 krt-19+ nodules (sample 3)
Relations
BioProject PRJNA188681

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44106_RAW.tar 2.8 Mb (http)(custom) TAR
GSE44106_non-normalized.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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