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Series GSE44272 Query DataSets for GSE44272
Status Public on Feb 11, 2016
Title The Long-HER Study
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Trastuzumab improves survival outcomes in patients with HER2+ metastatic breast cancer. Some of these patients may become long-term survivors. The Long-Her study was designed to identify clinical and molecular markers that could differentiate long-term survivors from patients having early progression to trastuzumab.
103 patients were registered in the Long-HER study, of whom 71 had obtained a durable complete response. Median age was 58 years. Metastatic disease was diagnosed after a median of 24.7 months since primary diagnosis. Sixty-five per cent of tumours were poorly differentiated ductal carcinomas and hormonal receptors were present in 47%. Metastases were present in the liver (25%), lungs (25%), bones (23%) and soft tissues (23%), with 20% of patients having multiple locations of metastases. Median progression-free survival was 10.6 years after the diagnosis of metastatic disease. Absence of trastuzumab as part of adjuvant therapy was the only clinical factor associated with long-term survival . Gene ontology analysis demonstrated that genes involved in HIF activation, EGF receptor signalling pathway, PI3 kinase pathway, apoptosis signalling pathway and p53 pathway significantly correlated with response. The PI3K pathway was the most strongly associated with poor response to trastuzumab-based therapy: tumours in the control group usually had four or five alterations in this pathway, whereas tumours in the Long-HER group had two alterations at most. These findings support that trastuzumab may provide a substantial long-term survival benefit in a selected group of patients. Whole genome expression analysis comparing long-term survivors vs. a control group predicted early progression to trastuzumab-based therapy. Multiple alterations in genes related to the PI3K-mTOR pathway seem to be required to confer resistance to this therapy.
 
Overall design 53 FFPE samples, which passed the RNA quality control criteria, were analyzed (45 primary tumours and 8 metastases). Among these 53 samples, 35 samples corresponded to long-term responders and 18 to the control group.
 
Contributor(s) Espinosa E, Zamora P, Fresno Vara JA, Gamez-Pozo A
Citation(s) 25330188
Submission date Feb 12, 2013
Last update date Mar 21, 2019
Contact name Juan Ángel Fresno Vara
E-mail(s) juanangel.fresno@idipaz.es
Organization name Hospital La Paz
Department INGEMM
Lab Molecular Oncology & Pathology
Street address Paseo de la castellana 261
City Madrid
State/province Madrid
ZIP/Postal code 28046
Country Spain
 
Platforms (1)
GPL13667 [HG-U219] Affymetrix Human Genome U219 Array
Samples (53)
GSM1081641 LH001_tumor_FFPE sample
GSM1081642 LH002_tumor_FFPE sample
GSM1081643 LH003_tumor_FFPE sample
Relations
BioProject PRJNA189275

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44272_RAW.tar 110.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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