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Series GSE45237 Query DataSets for GSE45237
Status Public on Jun 13, 2013
Title Frac-seq reveals preferential polyribosome association of minor mRNA isoforms
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The goal of this study was to test the hypothesis that minor alternative mRNA isoforms can be preferentially translated.
 
Overall design Included are Cytoplasm and Polyribosome samples in duplicate from both Control and Rapamycin treated cells.
 
Contributor(s) Sterne-Weiler T, Sanford JR
Citation(s) 23783272
Submission date Mar 18, 2013
Last update date May 15, 2019
Contact name Jeremy Sanford
E-mail(s) jsanfor2@ucsc.edu
Organization name UC Santa Cruz
Department MCD Biology
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (4)
GSM1099612 Cytoplasm DMSO 1
GSM1099613 Polyribosome DMSO 1
GSM1099616 Cytoplasm DMSO 2
Relations
BioProject PRJNA193306
SRA SRP019750

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45237_Alternative_Events_Differential_Polyribosome_Association.txt.gz 63.3 Kb (ftp)(http) TXT
GSE45237_Control_Rep1_MISO.txt.gz 150.8 Kb (ftp)(http) TXT
GSE45237_Control_Rep2_MISO.txt.gz 152.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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