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Series GSE45704

Query DataSets for GSE45704

Status

Public on Jun 23, 2013

Title

Expression data from FDC-induced myeloid cells (FDMCs)

Organism

Mus musculus

Experiment type

Expression profiling by array
Third-party reanalysis

Summary

We observed that follicular dendritic cell line induced a new type of CD11b+ myeloid cells (FDMCs) when cultured with a lineage-negative c-kit+ population from mouse spleen cells.
Thus, we used microarrays to characterize gene expression of FDMCs.

Overall design

FDMCs were induced on FDC line for RNA extraction and hybridization on Affymetrix microarrays.
Microarray data of "FDC-induced myeloid cells (FDMCs)" sample were combined with a large collection of other cell- and tissue-specific gene expression data sets (total: 205 individual data sets). Raw data (.cel) files were normalized using Robust Multichip Analysis (RMA Express; http://rmaexpress.bmbolstad.com/), annotated using the latest libraries available from Affymetrix, and arranged according to cell-type grouping.

Contributor(s)

Magari M, Mabbott NA, Ohmori H

Citation(s)

24052571

Submission date

Apr 02, 2013

Last update date

Feb 11, 2019

Contact name

Masaki Magari

E-mail(s)

magari@cc.okayama-u.ac.jp

Organization name

Okayama University

Street address

3-1-1, Tsushima-naka, Kita-ku

City

Okayama-shi

ZIP/Postal code

700-8530

Country

Japan

Platforms (1)

GPL1261

[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array

Samples (1)

GSM1112078

FDC-induced myeloid cells (FDMCs)

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BioProject

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE45704_Matrix_205samples.txt.gz	42.1 Mb	(ftp)(http)	TXT
GSE45704_RAW.tar	3.5 Mb	(http)(custom)	TAR (of CEL)
Processed data included within Sample table