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Status |
Public on Apr 30, 2013 |
Title |
RNA-sequencing project for zebrafish embryo and larva development |
Organism |
Danio rerio |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Zebrafish is an important model system for the study of vertebrate embryonic development and adaptive immunese response. Recent years have seen great advancement in the understanding of the regulatory mechanisms during zebrafish embryogenesis and immune processes, yet large gaps still remain in the functional pathways critical for each developmental stage, especially for the late embryonic development. We sequenced the polyA-extracted mRNA from 9 stages covering 7 major developmental periods of zebrafish. Whole genome gene expression pattern were analyzed to reveal unknown pathways or factors with implicated roles during each stage of vertebrate development.
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Overall design |
Analysis of total mRNA by highthroughput sequencing in 9 stages covering 7 periods during the embryonic and larval development of zebrafish
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Contributor(s) |
Yang H, Yao J, Ma H |
Citation(s) |
23700457, 26891128 |
Submission date |
Apr 02, 2013 |
Last update date |
May 15, 2019 |
Contact name |
Hongxing Yang |
E-mail(s) |
yanghx81@gmail.com
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Organization name |
Shanghai Chenshan Botanical Garden
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Street address |
3888 Chenhua Rd, Songjiang District
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City |
Shanghai |
State/province |
- |
ZIP/Postal code |
201602 |
Country |
China |
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Platforms (1) |
GPL10658 |
AB SOLiD System 3.0 (Danio rerio) |
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Samples (9)
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Relations |
BioProject |
PRJNA195909 |
SRA |
SRP020469 |
Supplementary file |
Size |
Download |
File type/resource |
GSE45706_Zv9_genes_RPKM_embryo_larva.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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