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Series GSE45706 Query DataSets for GSE45706
Status Public on Apr 30, 2013
Title RNA-sequencing project for zebrafish embryo and larva development
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Zebrafish is an important model system for the study of vertebrate embryonic development and adaptive immunese response. Recent years have seen great advancement in the understanding of the regulatory mechanisms during zebrafish embryogenesis and immune processes, yet large gaps still remain in the functional pathways critical for each developmental stage, especially for the late embryonic development. We sequenced the polyA-extracted mRNA from 9 stages covering 7 major developmental periods of zebrafish. Whole genome gene expression pattern were analyzed to reveal unknown pathways or factors with implicated roles during each stage of vertebrate development.
 
Overall design Analysis of total mRNA by highthroughput sequencing in 9 stages covering 7 periods during the embryonic and larval development of zebrafish
 
Contributor(s) Yang H, Yao J, Ma H
Citation(s) 23700457, 26891128
Submission date Apr 02, 2013
Last update date May 15, 2019
Contact name Hongxing Yang
E-mail(s) yanghx81@gmail.com
Organization name Shanghai Chenshan Botanical Garden
Street address 3888 Chenhua Rd, Songjiang District
City Shanghai
State/province -
ZIP/Postal code 201602
Country China
 
Platforms (1)
GPL10658 AB SOLiD System 3.0 (Danio rerio)
Samples (9)
GSM1112155 64-cell, 2 hpf
GSM1112156 oblong-sphere, 3.6-4hpf
GSM1112157 50%-epiboly, 5.25hpf
Relations
BioProject PRJNA195909
SRA SRP020469

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45706_Zv9_genes_RPKM_embryo_larva.txt.gz 1.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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