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Status |
Public on Apr 04, 2013 |
Title |
Promoters Active in Interphase are Bookmarked during Mitosis by Ubiquitination |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
We analyzed genome-wide modification of chromatin by ubiquitination in human cells and whether this mark changes through the cell cycle using modified ChIP-seq technique (ChAP-seq).
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Overall design |
Chromatin affinity purification was based on a standard ChIP method with modification of a two-step affinity purification.
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Contributor(s) |
Arora M, Parvin J, Zhang J |
Citation(s) |
22941662 |
Submission date |
Apr 04, 2013 |
Last update date |
May 15, 2019 |
Contact name |
Jeffrey Parvin |
URL |
http://parvinlab.bmi.ohio-state.edu/index.php?title=Main_Page
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Organization name |
the Ohio State University
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Department |
Biomedical Informatics
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Street address |
904 Biomedical Research Tower
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City |
Columbus |
State/province |
OH |
ZIP/Postal code |
43202 |
Country |
USA |
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Platforms (1) |
GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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Samples (17)
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GSM1114919 |
S0 stage, repeat 1 |
GSM1114920 |
S0 stage, repeat 2 |
GSM1114921 |
S0 stage, repeat 3 |
GSM1114922 |
S2 stage, repeat 1 |
GSM1114923 |
S2 stage, repeat 2 |
GSM1114924 |
S2 stage, repeat 3 |
GSM1114925 |
S4 stage, repeat 1 |
GSM1114926 |
S4 stage, repeat 2 |
GSM1114927 |
S4 stage, repeat 3 |
GSM1114928 |
M0 stage, repeat 1 |
GSM1114929 |
M0 stage, repeat 2 |
GSM1114930 |
M0 stage, repeat 3 |
GSM1114931 |
S0 stage, treated with Amanitin repeat 1 |
GSM1114932 |
S0 stage, treated with Amanitin repeat 2 |
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Relations |
BioProject |
PRJNA196241 |
SRA |
SRP020511 |
Supplementary file |
Size |
Download |
File type/resource |
GSE45771_RAW.tar |
31.6 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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