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Series GSE46042 Query DataSets for GSE46042
Status Public on May 02, 2014
Title Induced pluripotent stem cell derived neuronallineages as human cellular models for Herpes Simplex Virus, type 1 (HSV-1) infections
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Herpes simplex virus type 1 (HSV-1) is a 152 Kb double stranded DNA alpha-herpesvirus, which establishes long life latent infection in sensory neurons. Most of our knowledge regarding HSV-1 latency comes from in vivo studies using small animal models, mainly rodents and rabbits, which are not naturally infected by HSV-1. Furthermore, these animal models do not fully recapitulate the species specific effects of human HSV-1 infection. Human cellular models utilize trigeminal ganglia removed from cadavers or, alternatively, neuron-like cells derived from cancerous cell lines that do not fully reflect effects on normal human neurons. This limitation poses the need to develop an in vitromodel to investigate molecular details of the mechanisms underlying quiescence and reactivation in human neurons. Induced pluripotent stem (iPS) celltechnologies offer an unprecedented opportunity to generate unlimited supplies of neurons and the facility to manipulate such cells in vitro. In this study, we developed an in vitro HSV-1 infection model in human iPS-derived neurons, which displays the main hallmarks of latency defined in animal models and in humans. Our results show for the first time that: i) persistent infection cannot be established in neural progenitor cells (NPCs); ii) the ability of HSV-1 to establish persistent infection is extended to glutamatergic neurons, and not limited to sensory neurons; iii) in neuronal cultures persistently infected with HSV-1, viral genome is localized at the nuclear periphery; iv) HSV-1 acute infection reduces RNA editing at the GluRB site. These results highlight the importance of iPS-based platforms to elucidate unknown aspects of HSV-1 quiescence in human neurons.
 
Overall design NPCs were 70-80% confluence
 
Contributor(s) Nimgaonkar V, D'Aiuto L, Milosevic J
Citation(s) 24622295
Submission date Apr 15, 2013
Last update date Aug 13, 2018
Contact name Leonardo D'Aiuto
E-mail(s) daiutol@upmc.edu
Phone 4126570558
Organization name UPMC
Street address 3811 O’Hara Street
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (6)
GSM1122296 HSV-1-infected Neural progenitor cells 1
GSM1122297 HSV-1-infected Neural progenitor cells 2
GSM1122298 HSV-1-infected Neural progenitor cells 3
This SubSeries is part of SuperSeries:
GSE46043 Induced pluripotent stem cell derived neuronal lineages as human cellular models for Herpes Simplex Virus, type 1 (HSV-1) infections
Relations
BioProject PRJNA196994

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46042_RAW.tar 26.2 Mb (http)(custom) TAR
GSE46042_non_normalized.txt.gz 3.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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