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GEO accession:
Series GSE46123
Query DataSets for GSE46123
Status
Public on Jul 01, 2013
Title
ER and GR crosstalk at the Genomic Level in mouse mammary cells
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
We report changes in ER and GR binding profiles genome-wide upon co-treatment with Dex and E2 when compared to Dex or E2 treatments alone.
Overall design
We examine ER and GR binding under four different treatments (unt, Dex, E2, and Dex + E2).
Contributor(s)
Miranda TB
,
Hager G
,
Baek S
,
Sung M
Citation(s)
23803465
Submission date
Apr 16, 2013
Last update date
May 15, 2019
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platforms (1)
GPL9185
Illumina Genome Analyzer (Mus musculus)
Samples (39)
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GSM1123968
GR ChIP-Seq (untreated) r1
GSM1123969
GR ChIP-Seq (untreated) r2
GSM1123970
GR ChIP-Seq (+Dex) r1
GSM1123971
GR ChIP-Seq (+Dex) r2
GSM1123972
GR ChIP-Seq (+E2) r1
GSM1123973
GR ChIP-Seq (+E2) r2
GSM1123974
GR ChIP-Seq (Dex + E2) r1
GSM1123975
GR ChIP-Seq (Dex + E2) r2
GSM1123976
ER ChIP-Seq (untreated) r1
GSM1123977
ER ChIP-Seq (untreated) r2
GSM1123978
ER ChIP-Seq (+Dex) r1
GSM1123979
ER ChIP-Seq (+Dex) r2
GSM1123980
ER ChIP-Seq (+E2) r1
GSM1123981
ER ChIP-Seq (+E2) r2
GSM1123982
ER ChIP-Seq (Dex + E2) r1
GSM1123983
ER ChIP-Seq (Dex + E2) r2
GSM1123984
Input (Dex + E2) r1
GSM1123985
Input (Dex + E2) r2
GSM1123986
ER DBD mut ChIP-Seq (+E2) r1
GSM1123987
ER DBD mut ChIP-Seq (+E2) r2
GSM1123988
ER DBD mut ChIP-Seq (Dex + E2) r1
GSM1123989
ER DBD mut ChIP-Seq (Dex + E2) r2
GSM1123990
GR ChIP-Seq Afos (untreated) r1
GSM1123991
GR ChIP-Seq Afos (untreated) r2
GSM1123992
GR ChIP-Seq Afos (+Dex) r1
GSM1123993
GR ChIP-Seq Afos (+Dex) r2
GSM1123994
GR ChIP-Seq Afos (+E2) r1
GSM1123995
GR ChIP-Seq Afos (+E2) r2
GSM1123996
GR ChIP-Seq Afos (Dex + E2) r1
GSM1123997
GR ChIP-Seq Afos (Dex + E2) r2
GSM1123998
ER ChIP-Seq Afos (untreated) r1
GSM1123999
ER ChIP-Seq Afos (untreated) r2
GSM1124000
ER ChIP-Seq Afos (+Dex) r1
GSM1124001
ER ChIP-Seq Afos (+Dex) r2
GSM1124002
ER ChIP-Seq Afos (+E2) r1
GSM1124003
ER ChIP-Seq Afos (+E2) r2
GSM1124004
ER ChIP-Seq Afos (Dex + E2) r1
GSM1124005
ER ChIP-Seq Afos (Dex + E2) r2
GSM1124006
Input Afos (Dex + E2)
This SubSeries is part of SuperSeries:
GSE46124
ER, GR, and E2
Relations
BioProject
PRJNA197299
SRA
SRP021158
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE46123_RAW.tar
2.0 Gb
(http)
(custom)
TAR (of BEDGRAPH, CSV)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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