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Series GSE46579 Query DataSets for GSE46579
Status Public on Jun 17, 2013
Title A blood based 12-miRNA signature of Alzheimer patients
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We applied Next-Generation Sequencing (NGS) to miRNAs from blood samples of 48 AD (Alzheimer's Disease) patients and 22 unaffected controls, yielding a total of 140 unique mature miRNAs with significantly changed expression level. Of these, 82 were higher and 58 lower abundant in samples from AD patients. We selected a panel of 12 miRNAs for a qRT-PCR analysis on a larger cohort of 202 samples including not only AD patients and healthy controls but also patients with other CNS illnesses: Multiple Sclerosis, Parkinson's Disease, Major Depression, Bipolar Disorder, Schizophrenia, and Mild Cognitive Impairment, which is assumed to represent a transitional period before the development of AD. MiRNA target enrichment analysis of the selected 12 miRNAs indicated an involvement of miRNAs in nervous system development, neuron projection, neuron projection development, and neuron projection morphogenesis, respectively. Using this 12-miRNA signature we were able to differentiate between AD and controls with an accuracy of 93.3%, a specificity of 95.1%, and a sensitivity of 91.5%. The differentiation of AD from other neurological diseases was possible with accuracies between 73.8% and 77.8%. The differentiation of the other CNS disorders from controls yielded even higher accuracies.
 
Overall design Examination of the miRNA profile in blood samples of 48 AD patients and 22 controls
 
Contributor(s) Andreas K
Citation(s) 23895045
Submission date May 02, 2013
Last update date May 15, 2019
Contact name Andreas Keller
Organization name Saarland University
Street address Building 60
City Homburg
ZIP/Postal code 69112
Country Germany
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (70)
GSM1132688 AD sample 0
GSM1132689 AD sample 1
GSM1132690 AD sample 2
Relations
BioProject PRJNA201039
SRA SRP022043

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46579_AD_ngs_data_summarized.xls.gz 246.6 Kb (ftp)(http) XLS
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Processed data are available on Series record
Raw data are available in SRA

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