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Series GSE4658 Query DataSets for GSE4658
Status Public on Dec 31, 2006
Title static vs simulated microgravity
Organism Mus musculus
Experiment type Expression profiling by array
Summary The below table includes a smaller list of data that was analyzed by dChip and filtered by pvalue such that a file with about 4600 genes was obtained, which allowed for ease of use from 40,000 genes.
Keywords: static vs simulated microgravity
 
Overall design The total RNA was extracted from 2T3 pre-osteoblast cells exposed to static or simulated microgravity (Rotating Wall Vessel) conditions. The RNA was then sent to Affymetrix microarray core facility at Baylor College of Medicine (Houston, TX) for microarray analysis.
 
Contributor(s) Patel MJ, Liu W, Sykes M, Risin S, Risin D, Jo H
Citation(s) 17243119
Submission date Apr 11, 2006
Last update date Feb 11, 2019
Contact name Mamta Patel
Phone 404-727-3223
Organization name Georgia Tech and Emory University
Department Biomedical Engineering
Lab Hanjoong Jo Lab
Street address 101 Woodruff Circle #315
City Atlanta
State/province GA
ZIP/Postal code 30324
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (6)
GSM105147 RWV Static 1 3days exposure
GSM105148 RWV Static 2 3 days Exposure
GSM105149 RWV Static 3 for 3 days exposure
Relations
BioProject PRJNA95305

dChip analyzed data with pvalue <0.1 header descriptions
AffyID
FoldChange
RawPval.dChip
Representative.Public.ID
Gene.Title
Gene.Symbol
Gene.Ontology.Biological.Process
Gene.Ontology.Cellular.Component
Gene.Ontology.Molecular.Function
Pathway

Data table
AffyID FoldChange RawPval.dChip Representative.Public.ID Gene.Title Gene.Symbol Gene.Ontology.Biological.Process Gene.Ontology.Cellular.Component Gene.Ontology.Molecular.Function Pathway
1415670_at 0.72852408 0.392106 BC024686 "coatomer protein complex, subunit gamma" Copg 6810 // transport // inferred from sequence or structural similarity /// 6886 // intracellular protein transport // inferred from sequence or structural similarity /// 15031 // protein transport // inferred from sequence or structural similarity 5794 // Golgi apparatus // inferred from sequence or structural similarity /// 16020 // membrane // inferred from sequence or structural similarity 8565 // protein transporter activity // inferred from sequence or structural similarity ---
1415696_at 0.676933616 0.098858 BC005549 SAR1a gene homolog 1 (S. cerevisiae) Sara1 6810 // transport // inferred from electronic annotation /// 6886 // intracellular protein transport // inferred from electronic annotation /// 7264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 15031 // protein transport // inferred from electronic annotation 5783 // endoplasmic reticulum // inferred from electronic annotation /// 5794 // Golgi apparatus // inferred from electronic annotation 5525 // GTP binding // inferred from electronic annotation TGF_Beta_Signaling_Pathway // GenMAPP
1415699_a_at 1.201068098 0.006449 BC003350 G protein pathway suppressor 1 Gps1 --- 5634 // nucleus // inferred from electronic annotation /// 8180 // signalosome complex // inferred from direct assay 5515 // protein binding // inferred from physical interaction ---
1415700_a_at 0.820387461 0.130056 BC011111 "signal sequence receptor, gamma" Ssr3 --- 5783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 16021 // integral to membrane // traceable author statement 4872 // receptor activity // inferred from electronic annotation ---
1415711_at 1.192359031 0.026979 BC025221 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) Arfgef1 --- --- --- ---
1415712_at 1.63909883 0.034214 AJ250693 "zinc finger, RAN-binding domain containing 1" Zranb1 --- 5634 // nucleus // inferred from sequence or structural similarity /// 5737 // cytoplasm // inferred from sequence or structural similarity --- ---
1415715_at 1.566720144 0.059937 AK010497 RIKEN cDNA 2410015J15 gene 2410015J15Rik --- --- --- ---
1415716_a_at 1.234207197 0.042017 AA208652 ribosomal protein S27 Rps27 6412 // protein biosynthesis // inferred from sequence or structural similarity /// 7165 // signal transduction // inferred from sequence or structural similarity /// 8283 // cell proliferation // inferred from sequence or structural similarity 5622 // intracellular // inferred from sequence or structural similarity /// 5840 // ribosome // inferred from sequence or structural similarity /// 5843 // cytosolic small ribosomal subunit (sensu Eukaryota) // inferred from sequence or structural similarity /// 30529 // ribonucleoprotein complex // inferred from electronic annotation 3723 // RNA binding // inferred from sequence or structural similarity /// 3735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 8270 // zinc ion binding // inferred from sequence or structural similarity ---
1415724_a_at 0.671788173 0.195754 AV000235 cell division cycle 42 homolog (S. cerevisiae) Cdc42 910 // cytokinesis // inferred from electronic annotation /// 7015 // actin filament organization // inferred from sequence or structural similarity /// 7264 // small GTPase mediated signal transduction // inferred from sequence or structural similarity /// 7266 // Rho protein signal transduction // traceable author statement /// 46847 // filopodium formation // inferred from direct assay 30175 // filopodium // inferred from sequence or structural similarity 3924 // GTPase activity // inferred from direct assay /// 3924 // GTPase activity // inferred from sequence or structural similarity /// 3924 // GTPase activity // traceable author statement /// 5515 // protein binding // inferred from physical interaction /// 5525 // GTP binding // inferred from electronic annotation G13_Signaling_Pathway // GenMAPP /// Integrin-mediated_cell_adhesion_KEGG // GenMAPP
1415727_at 0.597906768 0.200875 AV017766 apolipoprotein A-I binding protein Apoa1bp --- --- 5515 // protein binding // inferred from sequence or structural similarity ---
1415728_at 0.782530582 0.016757 BG806432 "poly(A) binding protein, nuclear 1" Pabpn1 6378 // mRNA polyadenylylation // traceable author statement /// 6397 // mRNA processing // inferred from electronic annotation 5634 // nucleus // inferred from electronic annotation 3676 // nucleic acid binding // inferred from sequence or structural similarity /// 3723 // RNA binding // inferred from electronic annotation /// 8143 // poly(A) binding // traceable author statement mRNA_processing_binding_Reactome // GenMAPP
1415733_a_at 1.446086689 0.068987 BI080296 RIKEN cDNA 1110019J04 gene 1110019J04Rik --- --- --- ---
1415736_at 0.756703445 0.184679 NM_020031 prefoldin 5 Pfdn5 6457 // protein folding // inferred from electronic annotation 16272 // prefoldin complex // inferred from electronic annotation 5515 // protein binding // inferred from electronic annotation /// 51082 // unfolded protein binding // inferred from electronic annotation ---
1415756_a_at 0.560344345 0.235575 BB667523 SNAP-associated protein Snapap 6887 // exocytosis // inferred from electronic annotation /// 16079 // synaptic vesicle exocytosis // inferred from sequence or structural similarity 5829 // cytosol // inferred from direct assay /// 19717 // synaptosome // inferred from sequence or structural similarity /// 45202 // synapse // inferred from electronic annotation 149 // SNARE binding // inferred from sequence or structural similarity /// 5515 // protein binding // inferred from physical interaction ---
1415759_a_at 1.422558357 0.064085 BC028547 hepatitis B virus x interacting protein Hbxip 9615 // response to virus // inferred from sequence or structural similarity /// 16032 // viral life cycle // inferred from sequence or structural similarity --- --- ---
1415763_a_at 1.277485811 0.071056 BE853401 --- --- --- --- --- ---
1415764_at 1.37248285 0.03462 AK003350 RIKEN cDNA 5730454B08 gene 5730454B08Rik --- --- --- ---
1415768_a_at 1.284513096 0.116702 AV054417 ubiquitin-conjugating enzyme E2R 2 Ube2r2 6464 // protein modification // inferred from sequence or structural similarity /// 6512 // ubiquitin cycle // inferred from sequence or structural similarity --- 4840 // ubiquitin conjugating enzyme activity // inferred from sequence or structural similarity /// 4842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 16874 // ligase activity // inferred from sequence or structural similarity Proteasome_Degradation // GenMAPP
1415772_at 1.326302742 0.381399 BF118393 nucleolin Ncl --- 5634 // nucleus // inferred from electronic annotation /// 5730 // nucleolus // traceable author statement 3676 // nucleic acid binding // inferred from electronic annotation /// 3677 // DNA binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation mRNA_processing_binding_Reactome // GenMAPP
1415778_at 0.754791999 0.204095 NM_019768 mortality factor 4 like 2 Morf4l2 "1558 // regulation of cell growth // inferred from sequence or structural similarity /// 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 7568 // aging // inferred from sequence or structural similarity /// 16568 // chromatin modification // inferred from electronic annotation" 5634 // nucleus // inferred from sequence or structural similarity --- ---

Total number of rows: 4695

Table truncated, full table size 1888 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GSE4658_RAW.tar 37.2 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file

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