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Series GSE47961 Query DataSets for GSE47961
Status Public on Jul 31, 2013
Title SHAE003: SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures.
Organism Homo sapiens
Experiment type Expression profiling by array
Summary HAE cultures were infected with SARS-CoV, SARS-ddORF6 or SARS-BatSRBD and were directly compared to A/CA/04/2009 H1N1 influenza-infected cultures. Cell samples were collected at various hours post-infection for analysis.
 
Overall design Time Points = 0, 12, 24, 36, 48, 60, 72, 84 and 96 hrs post-infection for SARS-CoV. Time Points = 0, 24, 48, 60, 72, 84 and 96 hrs post-infection forSARS-ddORF6 and SARS-BatSRBD. Time Points = 0, 6, 12, 18, 24, 36 and 48 hrs post-infection for H1N1. Done in triplicate/quadruplicate for RNA Triplicates/quadruplicates are defined as 3/4 different wells, plated at the same time and using the same cell stock for all replicates. Time matched mocks done in triplicate from same cell stock as rest of samples. Culture medium (the same as what the virus stock is in) will be used for the mock infections. Infection was done at an MOI of 2.
 
Contributor(s) Baric R, Katze M, Sims A, Law GL, Chang J
Citation(s) 23935999
Submission date Jun 14, 2013
Last update date Jan 23, 2019
Contact name Michael Katze
E-mail(s) data@viromics.washington.edu
Organization name University of Washington
Department Microbiology
Lab Michael G. Katze, Ph.D
Street address Rosen Building 960 Republican St.
City Seattle
State/province WA
ZIP/Postal code 98109-4325
Country USA
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (141)
GSM1163396 SHAE003_BAT_0hr_1
GSM1163397 SHAE003_BAT_0hr_2
GSM1163398 SHAE003_BAT_0hr_3
This SubSeries is part of SuperSeries:
GSE47963 SARS-CoV, SARS-dORF6 and SARS-BatSRBD infection of HAE cultures.
Relations
BioProject PRJNA208497

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47961_RAW.tar 1.2 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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