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Series GSE48233 Query DataSets for GSE48233
Status Public on Jun 01, 2015
Title Genetic and physiological mechanisms underlying genotype by dietary stoichiometry interactions in Daphnia
Organism Daphnia pulex
Experiment type Expression profiling by array
Summary Understanding the fitness consequences of correlated shifts in ecological parameters is a central challenge in contemporary biology. We studied two genotypes of the waterflea, Daphnia pulex that exhibit striking genotype x environment (GxE) interaction in response to shifts in phosphorus (P) supply, which also alters dietary carbon (C) content. Genotype1 (G1) had higher fitness under a LoC:HiP (C:P~100) diet, while Genotype2 (G2) performed better in C:P~800 diet. Dual 14C/33P radiotracer assays clearly show that this GxE interaction is driven by physiological differences in the processing of C and P. G1 was more efficient in C processing, while G2 was more efficient in P use. Microarrays revealed that the genotypes differed in the expression of 6057 genes. Most of these genes were involved in pathways already known to be sensitive to stoichiometric imbalances. Our study provides the first step to couple functional genomics with ecologically explicit frameworks to understand the complexity of processes underlying GxE interactions.
 
Overall design 2 genotypes of Daphnia pulex, two dietary treatments (high and low phosphorus Scenedesmus algal, C:P= 100, and 800, respectively), exposed 6hours and 3days
 
Contributor(s) Jeyasingh PD
Citation(s) 24838198
Submission date Jun 24, 2013
Last update date Dec 14, 2016
Contact name Jacqueline Lopez
E-mail(s) jacqueline.ann.lopez@gmail.com
Phone 574-631-1902
Organization name University of Notre Dame
Department Biology
Lab Pfrender Laboratory
Street address 019 Galvin Life Science Center
City Notre Dame
State/province Indiana
ZIP/Postal code 46556
Country USA
 
Platforms (1)
GPL11278 NimbleGen Daphnia pulex Expression Array 12x135k (All Probes) [080925_Daphnia_UI_JC_expr]
Samples (36)
GSM1173162 LL415LP6hr-LL415HP6hr_Sample1
GSM1173163 LL415LP6hr-LL415HP6hr_Sample2
GSM1173164 LL415HP6hr-LL415LP6hr_Sample3
Relations
BioProject PRJNA209315

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48233_RAW.tar 300.1 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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