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Series GSE48286 Query DataSets for GSE48286
Status Public on Jul 03, 2013
Title High-throughput sequencing of PROMPT-enriched samples.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Sequencing of 5' and 3'ends and RNA-seq of PROMPT and mRNA molecules from control and exosome-depleted cells.
 
Overall design CAGE, 3'TAG and RNAseq library construction from RNA extracted from control and exosome-depleted cells.
 
Contributor(s) Jensen TH, Sandelin A, Steinmetz LM, Ntini E
Citation(s) 23851456, 25578728, 27455346
Submission date Jun 25, 2013
Last update date Oct 02, 2019
Contact name Aino Inkeri Järvelin
Organization name University of Oxford
Department Department of Biochemistry
Street address South Parks Road
City Oxford
ZIP/Postal code OX1 3QU
Country United Kingdom
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (6)
GSM1174214 CAGE egfp
GSM1174215 CAGE Rrp40
GSM1174216 RNASeq egfp
Relations
BioProject PRJNA209523
SRA SRP026315

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48286_RAW.tar 1.1 Gb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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