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Series GSE48908 Query DataSets for GSE48908
Status Public on Oct 15, 2014
Title Dynamics of intercellular and exosomal miRNAs in hypoxia-resistant KMS-11 cells
Organism Homo sapiens
Experiment type Expression profiling by RT-PCR
Summary In multiple myeloma (MM), abnormal plasma cells interact with bone marrow (BM) stromal cells and vascular cells among others. A part of the BM milieu is considered highly hypoxic, and myeloma cells in situ may be influenced by circumstances other than normoxia in vitro. Hence, we attempted to confirm the role of hypoxic MM-derived exosomes in the BM milieu. We established a novel hypoxia-resistant cell line, KMS-11-HR, derived from KMS-11 cells cultured for >4 months under hypoxia (1% O2), as a model of MM cells localizing in an extensively hypoxic milieu. We used KMS-11 cells and KMS-11-HR cells, as donor cells, and HUVECs as recipient cells. Exosomes derived from KMS-11 cells (normoxia or hypoxia) and exosomes derived from KMS-11-HR cells (hypoxia-resistant sub-line) were used for validation of angiogeneic activity, such as tube formation assay. Exosomes derived from the KMS-11-HR cells significantly increased tube formation of HUVECs than those from KMS-11 cells. To identify intercellular and exosomal miRNAs specifically expressed in hypoxia-resistant cells, we assess the expression profiles of intercellular and extracellular miRNAs in KMS-11 cells and KMS-11-HR cells using Taqman MicroRNA Array v2.0 (Applied Biosystems, Bedford, MA).
 
Overall design KMS-11 cells and KMS-11-HR cells were cultured for 24 hours under hypoxic conditions (1% O2). The exosome fraction was obtained from culture medium using Exoquick Exosome Precipitation Solution (System Biosciences, Mountain View, CA, USA). Isolation of cellular and exosomal miRNAs was performed using the miRNsasy kit (Qiagen). The expression profile of miRNAs was determined using the Human Taqman miRNA Arrays A (Applied Biosystems). RNU6B and a spike control (ath-miR159) were used as an invariant control for the cell and exosome, respectively. QRT-PCR was carried out on an Applied Biosystems 7900HT thermal cycler using the manufacturer’s recommended program. Finally, all the raw data from each array was run on Data Assist Software ver.3.1 (Applied Biosystems).
 
Citation(s) 25320245
Submission date Jul 16, 2013
Last update date Jan 07, 2015
Contact name Tomohiro Umezu
E-mail(s) t_umezu@tokyo-med.ac.jp
Organization name Tokyo Medical University
Department Department of Molecular Pathology
Street address 6-1-1 Shinjyuku
City Shinjyuku
State/province Tokyo
ZIP/Postal code 160-8402
Country Japan
 
Platforms (1)
GPL13987 Taqman Array Human MicroRNA A Card v2.0
Samples (6)
GSM1186676 KMS-11_Normoxia_24h-cell
GSM1186677 KMS-11_Hypoxia_24h-cell
GSM1186678 KMS-11-HR_Hypoxia_24h-cell
This SubSeries is part of SuperSeries:
GSE48983 Dynamics of intercellular and exosomal miRNAs in hypoxia-resistant cells
Relations
BioProject PRJNA212528

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48908_fold-change_KMS11.txt.gz 3.9 Kb (ftp)(http) TXT
GSE48908_non-normalized_data_KMS11.txt.gz 5.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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