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Series GSE51220 Query DataSets for GSE51220
Status Public on Sep 27, 2013
Title Gene expression profiles of 2D- and 3D-cultured fallopian tube secretory epithelial cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Background: Fallopian tube secretory epithelial cells (FTSECs) have been implicated as a cell-of-origin for high-grade serous epithelial ovarian cancer. However, there are relatively few in vitro models of this tissue type available for use in studies of FTSEC biology and malignant transformation. In vitro three-dimensional (3D) cell culture models aim to recreate the architecture and geometry of tissues in vivo and restore the complex network of cell-cell/cell-matrix interactions that occur throughout the surface of the cell membrane.

Results: We have established and characterized 3D spheroid culture models of primary FTSECs. FTSEC spheroids contain central cores of hyaline matrix surrounded by mono- or multi-layer epithelial sheets. We found that 3D culturing alters the molecular characteristics of FTSECs compared to 2D cultures of the same cells. Gene expression profiling identified more than a thousand differentially expressed genes between 3D and 2D cultures of the same FTSEC lines. Pathways significantly under-represented in 3D FTSEC cultures were associated with cell cycle progression and DNA replication. This was also reflected in the reduced proliferative indices observed in 3D spheroids stained for the proliferation marker MIB1. Comparisons with gene expression profiles of fresh fallopian tube tissues revealed that 2D FTSEC cultures clustered with follicular phase tubal epithelium, whereas 3D FTSEC cultures clustered with luteal phase samples.

Conclusions: This 3D model of fallopian tube secretory epithelial cells will advance our ability to study the underlying biology and etiology of fallopian tube tissues and the pathogenesis of high-grade serous epithelial ovarian cancer.
 
Overall design 3 primary FTSEC lines were plated in 2D, or in 3D on polyHEMA coated plates
 
Contributor(s) Lawrenson K, Gayther SA
Citation(s) 24070420
Submission date Sep 26, 2013
Last update date Aug 13, 2018
Contact name Kate Lawrenson
E-mail(s) kate.lawrenson@med.usc.edu
Organization name University of Southern California
Department Preventive Medicine
Street address 1450 Biggy Street
City Los Angeles
State/province CA
ZIP/Postal code 90026
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (18)
GSM1240674 FTE02_2D rep1
GSM1240675 FTE02_3D rep1
GSM1240676 FTE03_2D rep1
Relations
BioProject PRJNA221722

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51220_RAW.tar 26.2 Mb (http)(custom) TAR
GSE51220_non_normalized.txt.gz 5.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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