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Series GSE51585 Query DataSets for GSE51585
Status Public on Dec 04, 2013
Title Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila
Organism Drosophila melanogaster
Experiment type Other
Non-coding RNA profiling by high throughput sequencing
Summary Ago1-IP small RNA sequencing from S2R+ cells, with dsRNA knockdown of Dicer1 (and GFP control)
 
Overall design One Dicer knockdown sample and one GFP knockdown control.
 
Contributor(s) Westholm J, Lai E
Citation(s) 24220090
Submission date Oct 23, 2013
Last update date May 15, 2019
Contact name Jakub Orzechowski Westholm
E-mail(s) orzechoj@mskcc.org
Organization name Memorial Sloan-Kettering Cancer Center
Department Developmental Biology
Lab Eric Lai
Street address 1275 York Avenue, Box 252
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (2)
GSM1248737 dsGFP, Ago1-IP
GSM1248738 dsDcr1, Ago1-IP
Relations
BioProject PRJNA223639
SRA SRP031850

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51585_RAW.tar 18.7 Mb (http)(custom) TAR (of TXT)
GSE51585_rna_spikeins_seq.txt.gz 254 b (ftp)(http) TXT
GSE51585_vector_seq.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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