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Series GSE51954 Query DataSets for GSE51954
Status Public on Mar 23, 2015
Title Epigenome analysis of human epidermal and dermal samples with aging and sun exposure
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of epidermal and dermal samples obtained from sun-exposed and sun-protected body sites from younger (<35 years old) and older (>60 years old) individuals. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs in dermal and epidermal samples. Samples included 10 younger sun protected dermal samples, 10 younger sun exposed dermal samples, 10 older sun protected dermal samples, 10 older sun exposed dermal samples, 9 younger sun protected epidermal samples, 9 younger sun exposed epidermal samples, 10 older sun protected epidermal sample, 10 older sun exposed epidermal samples.
 
Overall design Bisulphite converted DNA from the 78 samples were hybridized to the Illumina Infinium 450k Human Methylation Beadchip.
 
Contributor(s) Vandiver AR
Citation(s) 25886480
Submission date Oct 31, 2013
Last update date Mar 22, 2019
Contact name Andrew Feinberg
Organization name Johns Hopkins University School of Medicine
Street address 855 N. Wolfe St
City Baltimore
State/province Maryland
ZIP/Postal code 21205
Country USA
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (78)
GSM1255769 genomic DNA from young sun protected dermis 1
GSM1255770 genomic DNA from young sun protected dermis 2
GSM1255771 genomic DNA from young sun protected dermis 3
This SubSeries is part of SuperSeries:
GSE52980 Epigenome analysis of human epidermal and dermal samples with aging and sun exposure.
Relations
BioProject PRJNA226640

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51954_Beta_values_non-normalized.txt.gz 296.1 Mb (ftp)(http) TXT
GSE51954_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table
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