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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 02, 2013 |
| Title |
Global analyses of the effect of different cellular contexts on microRNA targeting (RNA-Seq) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA-seqs followed by miRNA transfections (miR-124 and miR-155) into four different cell lines( HeLa, HEK293, Huh7, and IMR90).
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| Overall design |
There are two biological replicates of RNA-seqs per each miRNA transfection per each sample and there are corresponding mock transfections.
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| Contributor(s) |
Nam J, Rissland O, Bartel DP |
| Citation(s) |
24631284 |
| Submission date |
Nov 19, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Jin-Wu Nam |
| E-mail(s) |
coya75@gmail.com
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| Organization name |
Hanyang University
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| Street address |
222 Wangsimni Seongdong-gu
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| City |
Seoul |
| ZIP/Postal code |
133-791 |
| Country |
South Korea |
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| Platforms (2) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (24)
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| GSM1269344 |
miR-124 transfection to HeLa, replicate 1 |
| GSM1269345 |
miR-124 transfection to HeLa, replicate 2 |
| GSM1269346 |
miR-155 transfection to HeLa, replicate 1 |
| GSM1269347 |
miR-155 transfection to HeLa, replicate 2 |
| GSM1269348 |
Mock transfection to HeLa, replicate 1 |
| GSM1269349 |
Mock transfection to HeLa, replicate 2 |
| GSM1269350 |
miR-124 transfection to HEK293, replicate 1 |
| GSM1269351 |
miR-124 transfection to HEK293, replicate 2 |
| GSM1269352 |
miR-155 transfection to HEK293, replicate 1 |
| GSM1269353 |
miR-155 transfection to HEK293, replicate 2 |
| GSM1269354 |
Mock transfection to HEK293, replicate 1 |
| GSM1269355 |
Mock transfection to HEK293, replicate 2 |
| GSM1269356 |
miR-124 transfection to Huh7, replicate 1 |
| GSM1269357 |
miR-124 transfection to Huh7, replicate 2 |
| GSM1269358 |
miR-155 transfection to Huh7, replicate 1 |
| GSM1269359 |
miR-155 transfection to Huh7, replicate 2 |
| GSM1269360 |
Mock transfection to Huh7, replicate 1 |
| GSM1269361 |
Mock transfection to Huh7, replicate 2 |
| GSM1269362 |
Mock transfection to Huh7, replicate 3 |
| GSM1269363 |
Mock transfection to Huh7, replicate 4 |
| GSM1269364 |
miR-124 transfection to IMR90, replicate 1 |
| GSM1269365 |
miR-124 transfection to IMR90, replicate 2 |
| GSM1269366 |
Mock transfection to IMR90, replicate 1 |
| GSM1269367 |
Mock transfection to IMR90, replicate 2 |
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| This SubSeries is part of SuperSeries: |
| GSE52531 |
Global analyses of the effect of different cellular contexts on microRNA targeting |
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| Relations |
| BioProject |
PRJNA229375 |
| SRA |
SRP033131 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE52530_HEK293.expData.qn.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE52530_HEK293.expData.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE52530_HUH7.expData.qn.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
| GSE52530_HUH7.expData.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE52530_HeLa.expData.qn.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE52530_HeLa.expData.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE52530_IMR90.expData.qn.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE52530_IMR90.expData.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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