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Series GSE52687 Query DataSets for GSE52687
Status Public on Jan 02, 2014
Title The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (RNA-Seq)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Metastasis is the major cause of death in cancer patients, yet the genetic/epigenetic programs that drive metastasis are poorly understood. Here, we report a novel epigenetic reprogramming pathway that is required for breast cancer metastasis. Concerted differential DNA methylation is initiated by activation of the RON receptor tyrosine kinase by its ligand, macrophage stimulating protein (MSP). Through PI3K signaling, RON/MSP promotes expression of the G:T mismatch-specific thymine glycosylase MBD4. RON/MSP and MBD4-dependent aberrant DNA methylation results in misregulation of a specific set of genes. Knockdown of MBD4 reverses methylation at these specific loci, and blocks metastasis. We also show that the MBD4 glycosylase catalytic residue is required for RON/MSP-driven metastasis. Analysis of human breast cancers using a set of specific genes that are regulated by RON/MSP through MBD4-directed aberrant DNA methylation revealed that this epigenetic program is significantly associated with poor clinical outcome. Furthermore, inhibition of Ron kinase activity with a new pharmacological agent prevents activation of the RON/MBD4 pathway and blocks metastasis of patient-derived breast tumor grafts in vivo.
 
Overall design Examination of 3 cell types.
 
Contributor(s) Cunha S, Welm AL
Citation(s) 24388747
Submission date Nov 23, 2013
Last update date May 15, 2019
Contact name Stephanie Cunha
Organization name Huntsman Cancer Institute, University of Utah
Department Oncological Science
Street address 2000 Circle of Hope
City Salt Lake City
State/province Utah
ZIP/Postal code 84116
Country USA
 
Platforms (1)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
Samples (9)
GSM1274117 MCF7_1
GSM1274118 MCF7_2
GSM1274119 MCF7-RON/MSP_3
This SubSeries is part of SuperSeries:
GSE52689 The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4
Relations
BioProject PRJNA229803
SRA SRP033282

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52687_comp1_updated.txt.gz 2.9 Mb (ftp)(http) TXT
GSE52687_comp3_updated.txt.gz 2.9 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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