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Series GSE52864 Query DataSets for GSE52864
Status Public on Mar 01, 2014
Title Developmental Timecourses total-RNA sequencing [Ribosome repleted total RNA]
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary We report the presence of extensive, transcriptionally controlled oscillations in the C. elegans, developmental transcriptome. Furthermore, using ribosome profiling, we show that these oscillating transcripts are actively translated.
 
Overall design Examination of two timecourses that were collected over C. elegans development and analyzed by RNA-seq of "RiboMinus" libraries
 
Contributor(s) Hendriks G, Gaidatzis D, Aeschimann F, Großhans H
Citation(s) 24440504
Submission date Dec 02, 2013
Last update date May 15, 2019
Contact name Dimos Gaidatzis
E-mail(s) d.gaidatzis@fmi.ch
Organization name Friedrich Miescher Institute
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Platforms (1)
GPL13657 Illumina HiSeq 2000 (Caenorhabditis elegans)
Samples (26)
GSM1277173 RNASeq_riboM_contDevA_N2_21hr
GSM1277174 RNASeq_riboM_contDevA_N2_22hr
GSM1277175 RNASeq_riboM_contDevA_N2_23hr
This SubSeries is part of SuperSeries:
GSE52910 Extensive oscillatory gene expression during C. elegans larval development
Relations
BioProject PRJNA230377
SRA SRP033412

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52864_ce_geneExpression_riboM_normalized.txt.gz 1.3 Mb (ftp)(http) TXT
GSE52864_ce_geneExpression_riboM_rawCounts.txt.gz 792.0 Kb (ftp)(http) TXT
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Processed data are available on Series record
Raw data are available in SRA
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