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| Status |
Public on Jun 16, 2014 |
| Title |
Domain ChIRP reveals the modularity of long noncoding RNA architecture, function, and target genes |
| Organism |
Drosophila melanogaster |
| Experiment type |
Other
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| Summary |
Here we identify RNA-RNA, RNA-protein, and RNA-chromatin interactions of the roX1 lncRNA involved in dosage compensation in Drosophila.
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| Overall design |
Identification of lncRNA-occupied genomic sites by Domain ChIRP in chromatin prepared from Clone 8 cells (D. melanogaster, male cell line).
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| Contributor(s) |
Quinn JJ, Qu K, Chang HY |
| Citation(s) |
24997788 |
| Submission date |
Dec 05, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Kun Qu |
| E-mail(s) |
kqu@stanford.edu
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| Organization name |
Stanford University
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| Department |
Dermatology
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| Lab |
Howard Chang
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| Street address |
269 Campus Dr. CCSR 2150
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
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| Platforms (2) |
| GPL11203 |
Illumina Genome Analyzer IIx (Drosophila melanogaster) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA230684 |
| SRA |
SRP033531 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE53020_Clone8_input.bw |
263.0 Mb |
(ftp)(http) |
BW |
| GSE53020_LacZ_control.bw |
104.5 Mb |
(ftp)(http) |
BW |
| GSE53020_roX1_D2_merge.bw |
305.5 Mb |
(ftp)(http) |
BW |
| GSE53020_roX1_D3_471_peak_summits.bed.gz |
4.0 Kb |
(ftp)(http) |
BED |
| GSE53020_roX1_D3_merge.bw |
281.4 Mb |
(ftp)(http) |
BW |
| GSE53020_roX1_U1_merge.bw |
204.6 Mb |
(ftp)(http) |
BW |
| GSE53020_roX1_merge.bw |
213.6 Mb |
(ftp)(http) |
BW |
| GSE53020_roX2_merge.bw |
183.7 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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