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| Status |
Public on Dec 13, 2013 |
| Title |
Gene expression of non-typeable Haemophilus influenzae strain R2866 and R2866Δ0112 mutant grown in supplemented brain-heart infusion medium for 4 hours |
| Platform organism |
Haemophilus influenzae |
| Sample organism |
Haemophilus influenzae R2866 |
| Experiment type |
Expression profiling by array
|
| Summary |
Gene expresison profiles of the R2866 WT and R2866Δ0112 mutant gorwn 4 hours in supplemented brain-heart infusion medium. This experiment was conducted to determine the effects of R2866_0112 gene deletion on overall gene expression profile.
The results from this study are further discussed in: Modified lipooligosaccharide structure protects nontypeable Haemophilus influenzae from IgM-mediated complement killing in experimental otitis media. Langereis JD, Stol K, Schweda EK, Twelkmeyer B, Bootsma HJ, de Vries SP, Burghout P, Diavatopoulos DA, Hermans PW. MBio. 2012 Jul 3;3(4):e00079-12. doi: 10.1128/mBio.00079-12. Print 2012.
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| Overall design |
R2866 wild-type (n=4) and R2866Δ0112 mutant (n=4) were grown for 4 hours in supplemented brain-heart infusrion medium
The 4hr and 7hr analyses were performed separately and, therefore, the background corrections are different between the two experiments.
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| |
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| Contributor(s) |
Langereis JD, Stol K, Schweda E, Twelkmeyer B, Bootsma HJ, de Vries SP, Burghout P, Diavatopoulos DA, Hermans PW |
| Citation(s) |
22761391 |
| Submission date |
Dec 13, 2013 |
| Last update date |
Mar 14, 2014 |
| Contact name |
Jeroen Daniel Langereis |
| E-mail(s) |
j.langereis@cukz.umcn.nl
|
| Organization name |
Radboud University Medical Centre
|
| Department |
Department of Pediatrics
|
| Lab |
Laboratory of pediatric infectious diseases
|
| Street address |
PO Box 9101
|
| City |
Nijmegen |
| ZIP/Postal code |
6500HB |
| Country |
Netherlands |
| |
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| Platforms (1) |
| GPL18059 |
NimbleGen Haemophilus influenzae R2866 4x72K Custom Expression Array [110421_HB_Hin_R2866_expr] |
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| Samples (32)
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| This SubSeries is part of SuperSeries: |
| GSE53290 |
Gene expression of non-typeable Haemophilus influenzae strain R2866 and R2866Δ0112 mutant grown in supplemented brain-heart infusion medium |
|
| Relations |
| BioProject |
PRJNA231565 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE53287_416566_A01_WT_4_2_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416566_A01_WT_4_2_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416566_A03_118_4_2_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416566_A03_118_4_2_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416654_A01_WT_4_4_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416654_A01_WT_4_4_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416654_A03_118_4_4_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416654_A03_118_4_4_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416693_A01_WT_4_1_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416693_A01_WT_4_1_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416693_A03_118_4_1_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416693_A03_118_4_1_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416694_A01_WT_4_3_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416694_A01_WT_4_3_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416694_A03_118_4_3_2011-05-13_532_gridded.pair.gz |
1.2 Mb |
(ftp)(http) |
PAIR |
| GSE53287_416694_A03_118_4_3_2011-05-13_532_gridded_norm_RMA.pair.gz |
1.1 Mb |
(ftp)(http) |
PAIR |
| Processed data included within Sample table |
| Processed data are available on Series record |
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