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| Status |
Public on Feb 05, 2014 |
| Title |
Transcriptome sequencing of nasopharyngeal carcinoma model system (miRNA) |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Nasopharyngeal carcinoma (NPC) is a prevalent malignancyt disease in Southeast Asia among the Chinese population. Aberrant regulation of transcripts has been implicated in many types of cancers including NPC. Herein, we characterized mRNA and miRNA transcriptomes by RNA sequencing (RNASeq) of NPC model systems.
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| |
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| Overall design |
Matched total mRNA and small RNA of undifferentiated Epstein-Barr virus (EBV)-positive NPC xenograft X666 and its derived cell line C666, well-differentiated NPC cell line HK1, and the immortalized nasopharyngeal epithelial cell line NP460 have been sequenced by Solexa technology.
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| |
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| Contributor(s) |
Szeto CY, Lung ML, Lin CH, Choi SC, Yip TT, Ngan RK, Tsao GS |
| Citation(s) |
24490137 |
| Submission date |
Jan 16, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Chi Ho Lin |
| E-mail(s) |
nicklin.cpos@hku.hk
|
| Phone |
+852 2831 5511
|
| Organization name |
The University of Hong Kong
|
| Department |
Centre for PanorOmic Sciences
|
| Street address |
6th Floor, The Hong Kong Jockey Club Building for Interdisciplinary Research, 5 Sassoon Road, Pokfulam
|
| City |
Hong Kong |
| ZIP/Postal code |
Hong Kong |
| Country |
Hong Kong |
| |
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| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
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| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE54174 |
Transcriptome sequencing of nasopharyngeal carcinoma model system |
|
| Relations |
| BioProject |
PRJNA235331 |
| SRA |
SRP035478 |
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