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Series GSE54186 Query DataSets for GSE54186
Status Public on Jan 18, 2014
Title Discovery of consensus gene signature and intermodular connectivity defining self-renewal of human embryonic stem cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Comparison of gene expression signatures in undifferentiated hESCs against differentiated embryoid bodies to identify key signatures defining self-renewal of hESCs.
 
Overall design Using H1 and H9 hESC lines, we performed gene expression microarray analysis (Affymetrix Human Genome U133 Plus 2.0 Array) and analyzed the interaction patterns of 54,614 genes using WGCNA in R programming
 
Contributor(s) Kim JJ, Khalid O, Namazi A, Tu TG, Elie O, Lee C, Kim Y
Citation(s) 24519983
Submission date Jan 17, 2014
Last update date Mar 25, 2019
Contact name Yong Kim
E-mail(s) thadyk@ucla.edu
Organization name UCLA
Street address 10833 Le Conte Ave, 73-022 CHS
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (8)
GSM1309417 undifferentiated H1 hESC biological rep 1
GSM1309418 undifferentiated H1 hESC biological rep 2
GSM1309419 differentiated H1 hESC biological rep 1
Relations
BioProject PRJNA235386

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54186_RAW.tar 39.9 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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