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Series GSE54843 Query DataSets for GSE54843
Status Public on Oct 20, 2014
Title Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Methylation profiling by high throughput sequencing
Expression profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 25453758
Submission date Feb 10, 2014
Last update date May 15, 2019
Contact name Keith D Robertson
E-mail(s) robertson.keith@mayo.edu
Phone 507-266-4886
Organization name Mayo Clinic
Department Molecular Pharmacology & Experimental Therapeutics
Lab Epigenetic Etiology of Human Disease Laboratory
Street address 200 First Street SW, Stabile 12-70
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
 
Platforms (3)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (56)
GSM1324989 NCCIT_siRNA_NTC (biological replicate 1)
GSM1324990 NCCIT_siRNA_DNMT1 (biological replicate 1)
GSM1324991 NCCIT_siRNA_D1+3A
This SuperSeries is composed of the following SubSeries:
GSE54840 Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome [methylation]
GSE54841 Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome [gene expression]
GSE54842 Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome [MBD-seq]
Relations
BioProject PRJNA237801

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54843_RAW.tar 2.7 Gb (http)(custom) TAR (of BED, BIGWIG, CEL, TXT)
SRA Run SelectorHelp

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