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Series GSE55126 Query DataSets for GSE55126
Status Public on Jul 01, 2021
Title Gene expression in the colon tumor of AOM/DSS-treated RBJ-/- mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary The purpose of this study was to determine which genes are differentially regulated by the Ras-related small GTPase RBJ after induction by AOM/DSS treatment in the colon of C57BL/6 mice compared to RBJ+/+ mice. The results demonstrate decreased induction of cell proliferation-associated genes in RBJ-/- mice than in RBJ+/+ mice on day 80 after AOM/DSS treatment. The majority of differentially expressed genes are regulated by MEK/ERK signaling pathway. Thus RBJ may be involved in the regulation of tumor progression and tumorigenesis.
 
Overall design RBJ+/+ and RBJ-/- mice (5/group) were either untreated or treated with AOM (12 mg/kg) on day 0. On day 7, 3 cycles of DSS (2.5% in drinking water; 7 days/cycle) were itiated, each separated by 14 days of vehicle control (water). Mice were sacrificed on day 80 day after AOM treatments.Tumor tissues in distal colon of the mice were prepared for total RNA individually. Equal amounts of RNA derived from 3 individual mice per group were mixed together, and assayed for gene expression using Affymetrix mouse 430 2.0 arrays.
 
Contributor(s) Chen T, Yang M, Yu Z, Tang S, Cao X
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Submission date Feb 18, 2014
Last update date Jul 01, 2021
Contact name Taoyong Chen
E-mail(s) chenty@immunol.org
Phone 86-21-55620605
Organization name Second Military Medical University
Lab National Key Laboratory of Medical Immunology & Institute of Immunology
Street address 800 Xiangyin Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (4)
GSM1329869 RBJ+/+ colon tumor, AOM/DSS-untreated
GSM1329870 RBJ-/- colon tumor, AOM/DSS-untreated
GSM1329871 RBJ+/+ colon tumor, AOM/DSS-treated
Relations
BioProject PRJNA238585

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55126_RAW.tar 15.2 Mb (http)(custom) TAR (of CEL)
GSE55126_annotated_results.txt.gz 22.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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