|
| Status |
Public on May 19, 2014 |
| Title |
TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
|
| Summary |
Analysis of 5-hydroxymethylcytosine changes in hypoxia in neuroblastoma cells
|
| |
|
| Overall design |
5-hmC distribution was analyzed from cells exposed to hypoxia (1% O2) or normoxia (20% O2); mRNA was sequenced in parallel for expression analysis.
RNA-seq was done using NBL-WN cells, hMe-SEAL experiment was done using NBL-WN cells and SK-N-BE(2) cells
|
| |
|
| Contributor(s) |
Mariani CJ, Godley LA |
| Citation(s) |
24835990 |
| Submission date |
Feb 26, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Christopher Mariani |
| E-mail(s) |
christopher.mariani@gmail.com
|
| Organization name |
University of Chicago
|
| Street address |
900 E 57 St
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (14)
|
|
| Relations |
| BioProject |
PRJNA239458 |
| SRA |
SRP038987 |
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