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Series GSE5640 Query DataSets for GSE5640
Status Public on Jan 08, 2007
Title Growth promotion of Arabidopsis by Trichoderma hamatum
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Trichoderma spp. are ubiquitous soil-borne ascomycetous fungi that have been used widely in the biological control of plant diseases. Certain strains also exhibit growth promotion of plants, but the mechanism for this phenomenon has not yet been elucidated. We have recently identified an isolate of T. hamatum that causes significant increases in the development of Arabidopsis root systems. The aim of this work is to elucidate the mechanism of root growth promotion. One approach is to analyse the transcriptome of plants grown in the presence and absence of the fungus.
Experimenter name = Christopher Thornton
Experimenter phone = 01392 264653 / 01392 264689
Experimenter department = Washington Singer Lab
Experimenter address = School of Biological and Chemical Sciences
Experimenter address = University of Exeter
Experimenter address = Perry Road, Exeter,
Experimenter zip/postal_code = EX4 4QG
Experimenter country = UK
Keywords: pathogenicity_design, stimulus_or_stress_design
 
Overall design 2 samples were used in this experiment
 
Contributor(s) Thornton C, Townsend H, Emmerson Z, Schildknecht B
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (2)
GSM131841 Thornton_1-1_Control_Rep1_ATH1
GSM131842 Thornton_1-2_Col+trichoderma_Rep1_ATH1
Relations
BioProject PRJNA96837

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE5640_RAW.tar 4.5 Mb (http)(custom) TAR (of CEL)

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