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Series GSE56746 Query DataSets for GSE56746
Status Public on Apr 02, 2015
Title High throughput sequencing of B.henselae infected and non-infected I. ricinus salivary glands
Organism Ixodes ricinus
Experiment type Expression profiling by high throughput sequencing
Summary In order to select genes that are differentially expressed in salivary glands during Ixodes ricinus infection by Bartonella henselae we compare the transcriptome of infected and non-infected salivary glands
 
Overall design I. ricinus from a pathogen free colony were infected -or not- with B. henselae at the larval and then the nymphal stage and salivary glands of the resulting females adult were dissected for RNA extraction. 454 sequencing was performed on pooled conditions in order to obtain a reference databank. Infected and non-infected samples were then sequenced separatly with illumina, blaston teh reference datbank and compared.
 
Contributor(s) Bonnet SI, Liu XY
Citation(s) 25057911
BioProject PRJNA237360
Submission date Apr 11, 2014
Last update date May 15, 2019
Contact name Sarah Irene Bonnet
E-mail(s) sbonnet@vet-alfort.fr
Phone 33 1 49 77 46 54
Organization name INRA
Department Animal Health
Lab USC Bartonella tiques
Street address 23 avenue du general de Gaulle
City Maisons Alfort
ZIP/Postal code 94706
Country France
 
Platforms (2)
GPL18566 454 GS FLX (Ixodes ricinus)
GPL18567 Illumina Genome Analyzer II (Ixodes ricinus)
Samples (3)
GSM1368016 I. ricinus B. henselae infected and non-infected salivary glands
GSM1368017 I. ricinus salivary glands
GSM1368018 I. ricinus B. henselae-infected salivary glands
Relations
SRA SRP041127

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56746_NG-5717_comparative_table.tsv.gz 235.4 Kb (ftp)(http) TSV
GSE56746_NG-5717_nr-blast_out_top5.txt.gz 1.9 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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