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| Status |
Public on Apr 12, 2014 |
| Title |
Layer 4 Visual Cortex Star Pyramid Monocular Deprivation Microarray Study |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Microarray expression profiling of manually sorted m-citirin-labeled layer 4 visual cortex star pyramid neurons from deprived and non-deprived hemispheres.
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| Overall design |
Monocular deprivation by TTX-injection (at P12-13 and again at P13-14), followed by manual sorting of m-Citrin-labeled Layer 4 Visual Cortex Star Pyramid neurons in deprived and non-deprived hemispheres. RNA was extracted using PicoPure RNA Isolation Kit, reverse transcribed, and amplified using a standard T7 IVT protocol (Affymetrix Small Sample Target Labeling Assay Version II).
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| Contributor(s) |
Stenimetz CC, Sugino K, Shima Y, Rutlin M, Tavarty V, Lambo M, Hempel C, Okaty BW, Paradis S, Nelson SB, Turrigiano GG |
| Citation(s) |
27568566 |
| Submission date |
Apr 11, 2014 |
| Last update date |
Jul 10, 2019 |
| Contact name |
Benjamin Okaty |
| E-mail(s) |
bokaty@genetics.med.harvard.edu
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| Organization name |
Harvard Medical School
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| Street address |
77 Avenue Louis Pasteur
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL6096 |
[MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version] |
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| Samples (6)
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| GSM1368221 |
Layer 4 Visual Cortex Star Pyramid Non-Deprived, 1l |
| GSM1368222 |
Layer 4 Visual Cortex Star Pyramid Non-Deprived, 2l |
| GSM1368223 |
Layer 4 Visual Cortex Star Pyramid Non-Deprived, 3l |
| GSM1368224 |
Layer 4 Visual Cortex Star Pyramid Deprived, 1r |
| GSM1368225 |
Layer 4 Visual Cortex Star Pyramid Deprived, 2r |
| GSM1368226 |
Layer 4 Visual Cortex Star Pyramid Deprived, 3r |
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| Relations |
| BioProject |
PRJNA244446 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE56758_RAW.tar |
134.1 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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